| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2923 |
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| Symbol | |
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| ID | 5610259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3536537 |
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| End bp | 3538969 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933863 |
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| Product | anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein |
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| Protein accession | YP_001474658 |
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| Protein GI | 157376058 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGCA GAAGTTTCTT AAAAATGAGT GCCGCTATGG GCTGCGCCGC GACGGTGGCA
GGCTGTAACT CCAGCTCAAG CGATGTCGAC GTTGTGCCAC CAACGCCTCC GGTCACCGAA
GGTGAAACCA TGAACTGGTC CTCCTGTCTG GTGAACTGTG GCTCTAACTG CCCGGTCAGA
GTCTACTCAA AAGATGGGGT GATCACCCGC ATAGAGTCGC AGTTTACCAC CGAAGACACT
TATGGTAATC ACGATGTGCG CGCCTGTCTG CGTGGACGCT CGTTACGAAA GCGTGTGTAT
GCGCCAGAGC GGTTAAAATA CCCCATGAAG CGGGTCGGTC CCCGCGGCAG CGGTCAATTC
GAGCGCATCA GTTGGGATGA GGCTCTGAAT ACTGTCGCCG AAAGGTTGCA GGGCATTATC
GACCAATATG GTAACGAGTC TATCTTTGAT ATGACGGGGA CGGGTACTTT TGGACACTTT
AAATCACTCG CCATGGTACA CCGCCTGCTA AACGCCATGG GCGGTAGCTT GAAGCGCTAT
GGTGTGTATA GCTATGCACA GTTGTTCGAA GCGTCAAGAT ATACCTATGG AACTCCCTTC
GTGGGGCTGC AGGGGAGTAC CTATTCCGAG ATGCAACACT CAGATCTGGT GTTATTTGTA
GGCCATAACC CGTCGGAGCT GCGCATGAGT GGCTCGGGGC AAGGTTATGA CTTCCTGAAT
CAGAAACAAA CTAATAATTT TAAGACCATC ATCATAGATC CGCGTTATAC CGATACTGCT
GTGGGTAAGG AAGATCAGTG GATCGCCATT CGTCCCGGGA CGGATGCAGC GTTGTTCGAG
GCGCTGGCTT ATGAGTGGAT CACTCAGGGG AAAGTCGATC AGGCCTTCCT GAACAAGTAT
TGTGTTGGCT ACGACGAGAA GACCCTACCC GAGGGCGTGG ACTATGGGGA GAGCTATAAG
TCTTATATTT TGGACAATGC CACTATCGGC GAGCTGACCC CGGGAGATAA TGCCAAGACG
CCGGCTTGGG CGGCGGGTAT CACAGGTATC CCCGAGCACA CCATTATTGA ATTGGCGAGG
GAGTTGGCCG CCGCCAAGGC GCCGTTTATC AAGTTAGGGC TCACATTGAA CCGTCATGCG
GCAGGTGAAA ACAATATGCG CGCCGGTTAC ATGCTCCCCA TCCTGCTGGG GCAACTTGGT
TTACCCGGGA CCAATAACGG TGGAGATAGC TCGGGAGGCC ACTGTGTTGT CCCCCGTATC
GCGGAACTAG AAAATCCGGT AAAGAAAGAG ATCTCTTTCT TTACCTATTT GCAGGCTGTC
GAAGACGGCA AGAATATGAC CGTGTTAGCC GATGGCGTTC GAGGTGTCGA ACTGGATGAG
AATGGCGATG GCAAGCTGGG TACCGATATC AAGGCTATCG TCAACTGGTT CAGCAACTCC
ATGATTAATC AGCATTCAGA TGTGCGAAAG TCTGAAGAGG TGATAAAGGA TGAAAGTCTG
TGTGAATTTA TCCTTACGGT CGATAATATC ATGACCCCTA GCGCTAAATT CTCCGACATC
ATCTTGCCGG ATACTACCTG GCTGGAGGAT GAAGAGCTGG TCAATCAAAA CCATGTACCA
GGCGATACAG GGACCGTTAT TCAGATGAGT TCGGGTATCG AACCTCTGTT TGAGAGCCGT
CACTCCTATG ATATCTGCAC CGAAATCGCC AAGAGAATGG GCTGTGAACA GGCGTTCACC
GAAGGCAAGA CGATGCAGCA ATGGCTAAAT GAGATGTATG CAATGTCACA AGCGGCCAAC
CCTGGTTTGC CCGATAAAGA GGTGATGTTG AAGCAGGGGA TCTATCGTAA GTATCTGCCC
CACGGCAGTC AGATTGCGAT GAAGGGGTTC CGTGACGATC CTGAGGCCAA CCGCCTCTAT
ACGCCATCGG GTAAGATTGA GATCTACTCA TCACGTTTGG CCCATAAGGC CAAAACCTGG
GAGCTCAGAG AGGGGGACGT GATATCGGCG CTGCCCAAAT ATACCCCCAC CTGGGACGGC
TATGAGGACA GTGAAACCCG GGAAAAATAT CCACTGCAGC TGACCTGTTA TCACACTAAG
GGGCGGGTTC ACTCCAGTTA CCATAATATC CCCTGGCTCA GAGAGGTGGT GCAAGATGCC
GTGTGGATGA ATCCTATCGA TGCTCAGGCG AGAAACCTGA AAACCGGCGA CTTGGTGCAT
GTCTTTAACG ATCGCGGCAC CCTGGAGGTC GAAGTTAAGG TGACGCCTCG GATCATGATA
GGTGTCACCG CACTGGGCCA AGGTGCCTGG TCGAAATTTG AGGATGGCAT CGATAAGGGA
GGCAATGTGA ATACTATTAC TTCACAACGC CCCACGCCTT TGTCGAAAGG CAATCCACAG
CACACTAACC GGGTCGAGAT CCGCAGAGCC TGA
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| Protein sequence | MERRSFLKMS AAMGCAATVA GCNSSSSDVD VVPPTPPVTE GETMNWSSCL VNCGSNCPVR
VYSKDGVITR IESQFTTEDT YGNHDVRACL RGRSLRKRVY APERLKYPMK RVGPRGSGQF
ERISWDEALN TVAERLQGII DQYGNESIFD MTGTGTFGHF KSLAMVHRLL NAMGGSLKRY
GVYSYAQLFE ASRYTYGTPF VGLQGSTYSE MQHSDLVLFV GHNPSELRMS GSGQGYDFLN
QKQTNNFKTI IIDPRYTDTA VGKEDQWIAI RPGTDAALFE ALAYEWITQG KVDQAFLNKY
CVGYDEKTLP EGVDYGESYK SYILDNATIG ELTPGDNAKT PAWAAGITGI PEHTIIELAR
ELAAAKAPFI KLGLTLNRHA AGENNMRAGY MLPILLGQLG LPGTNNGGDS SGGHCVVPRI
AELENPVKKE ISFFTYLQAV EDGKNMTVLA DGVRGVELDE NGDGKLGTDI KAIVNWFSNS
MINQHSDVRK SEEVIKDESL CEFILTVDNI MTPSAKFSDI ILPDTTWLED EELVNQNHVP
GDTGTVIQMS SGIEPLFESR HSYDICTEIA KRMGCEQAFT EGKTMQQWLN EMYAMSQAAN
PGLPDKEVML KQGIYRKYLP HGSQIAMKGF RDDPEANRLY TPSGKIEIYS SRLAHKAKTW
ELREGDVISA LPKYTPTWDG YEDSETREKY PLQLTCYHTK GRVHSSYHNI PWLREVVQDA
VWMNPIDAQA RNLKTGDLVH VFNDRGTLEV EVKVTPRIMI GVTALGQGAW SKFEDGIDKG
GNVNTITSQR PTPLSKGNPQ HTNRVEIRRA
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