| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2913 |
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| Symbol | |
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| ID | 5609936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3524067 |
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| End bp | 3525350 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933853 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001474648 |
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| Protein GI | 157376048 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAATC CATGCCTCAG TGATAAAAAC CCTTGCGATG AAAGCATAAC TAATGAGGTC
AGGGAGATCC GTCTTATATG GGGCCTGTCG ATCGCCTCTG TGGTTATCTA TATCAACCTC
TATTTAGTGC AGGGGATCTT GCCCTTAATC GCTGAGACAT TCGACGTTGC AACCAGCCAT
GCGACCTTAC TGTTGTCGGT GACCAGTTTC GCGATGGCAT TTTCACTGCT GTTTTATGCC
ATCTTATCCG ATAGGGTGGG GCGTAAGGCA CCGCTACTCG CCAGCTTATA CCTGTTACTA
CTCTCAGATT TAATGATGCT CTTCGTTGCC GAGTTCAGCC ATTTGGTGGT GCTTCGCTTA
CTTCAGGGAG GATTACTTGC GGCCGTTCCT GCCATTGCTA TGGCTTACTT TAAAGATGAG
CTGAGCCAAG GAGCGATGCT TAAGGCCGGG GCCATCTATA TTGCAGCTAA TAGTGTGGGC
GGAATAGCCG GCAGACTGAT TGGTGGAGGC CTGTCGCTTT ACATGAGCTG GCAGGAGCTG
ATGTCGGTGA TTCTACTGCT TTCACTGTTT GGCGTTATCA TCGTCCATTA CCTGCTACCG
ACCCGCATAA AACCGCTGGT TTCAGAGTCT GATAAGAAGA CGGATGAAAT AGCAATTAAA
TCGCGAAAAC TGTTTAGGGT GACGGATTTT AAAGGCTTCT GGCTTCACCT TGGGGATAGT
AAATTACGTA ATATCTACCT GGTTGGAGGG CTGGCATTTT TGGTGATGGT GAATCAATTT
AGCTTTATTC AGCTGCACCT GATGTCATCA CCATTCAATT GGGGACGTTT CGAAGTGACG
CTCATCTTCC TCTGTTATCT CAGTGGCACA TTGGCATCTT ACTACTCTGT GCATTGGGTC
AAGCGCTACG GTCGTGAGCG GCTGTTTAAG CTGGCGCTGT TATTAATGAT CTCGGGCAGT
ATCGTCACGC TATTTGATAC TACCGGCTTT ATCTGTATCG GATTTTTATT AACGGCATTT
GGTTTTTTCT TTATCCATAG CAGCTGTAAT GCCTGGGTAG CACAGAGAGC CAAGTTGCAT
AGAGCAAAGG CTACAGCGCT ATATTTGTGT AGTTACTATC TTGGCGCCGC ATTGGGTGGG
CCATACCTGA TGCCATTTTG GCAGCATTGG GGTTGGAGCG GAGTTGTTAT GGGCTCAATT
ATCGCACTGA CCGTGTTAGC CTTGGTGATA TTTAAAGTCA CCAAAGTAGA GCGATTCGAT
ATCGGTCAGG TGAGTGTATC CTAA
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| Protein sequence | MGNPCLSDKN PCDESITNEV REIRLIWGLS IASVVIYINL YLVQGILPLI AETFDVATSH
ATLLLSVTSF AMAFSLLFYA ILSDRVGRKA PLLASLYLLL LSDLMMLFVA EFSHLVVLRL
LQGGLLAAVP AIAMAYFKDE LSQGAMLKAG AIYIAANSVG GIAGRLIGGG LSLYMSWQEL
MSVILLLSLF GVIIVHYLLP TRIKPLVSES DKKTDEIAIK SRKLFRVTDF KGFWLHLGDS
KLRNIYLVGG LAFLVMVNQF SFIQLHLMSS PFNWGRFEVT LIFLCYLSGT LASYYSVHWV
KRYGRERLFK LALLLMISGS IVTLFDTTGF ICIGFLLTAF GFFFIHSSCN AWVAQRAKLH
RAKATALYLC SYYLGAALGG PYLMPFWQHW GWSGVVMGSI IALTVLALVI FKVTKVERFD
IGQVSVS
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