| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2874 |
|---|
| Symbol | |
|---|
| ID | 5611788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3479730 |
|---|
| End bp | 3480494 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933793 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001474609 |
|---|
| Protein GI | 157376009 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.718962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000232974 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGCA ATATTCGTGT CGTACTCGTT GGTACATCTC ATCCTGGGAA CATAGGTTCC
ACAGCCCGTG CAATGAAAAC CATGGGACTC TCTACATTAT ATCTTGCCGA ACCTCGTGTT
GCGCCCGATG GGCATTCGGT CGCTTTGGCT GCCGGGGCAT CAGATATTCT TAAACATGCG
GTTACTGTCG ATAGCGTCGC AGAAGCCATT GCGGATTGTA GTCTGGTTAT CGCGACCAGT
GCACGCAGTC GTACATTAGA CTGGCCAATG CTGGAACCGA GAGAGGCCGG CGAAAAGTTA
GTTGCTTCTG CTTTAACTGG TCCTGTCGCC ATCGTATTTG GTCGTGAAAA TAATGGTCTT
AGCAATGAAG AGCTGCAGAA ATGTAACTAT CATGTCGCGA TACCGGCAAA CCCGGAATAT
ACTTCGCTTA ACTTAGCACA AGCGGTACAG ATCATCTGTT ATGAAGCGCG TGTGGCTCAC
CTTGCTCAGG TTCAGCGTGA TTTTGAAAAT GCCAAACCTG AAGGCTATGT TGAGCCGGTG
AATGAATATC CTTTTGCAAA AGAGCGTGAA AACTTTTTTA GTCACCTCGA AGAGACACTG
CTCAATACCG GCTTCATAGT TAAGCAGCAT CCTGGTCAGG TAATGACAAA GTTACGTCGT
CTGTTTAGTC GAGCCAGGTT GGAAAGACAA GAGATGAATA TCCTGAGAGG GATGTTAACC
TCTATCGATA AAAAAGTGGC ACCGAAAGAC AATAACGAAG CATAA
|
|---|
| Protein sequence | MLSNIRVVLV GTSHPGNIGS TARAMKTMGL STLYLAEPRV APDGHSVALA AGASDILKHA
VTVDSVAEAI ADCSLVIATS ARSRTLDWPM LEPREAGEKL VASALTGPVA IVFGRENNGL
SNEELQKCNY HVAIPANPEY TSLNLAQAVQ IICYEARVAH LAQVQRDFEN AKPEGYVEPV
NEYPFAKERE NFFSHLEETL LNTGFIVKQH PGQVMTKLRR LFSRARLERQ EMNILRGMLT
SIDKKVAPKD NNEA
|
|---|
| |