Gene Ssed_2825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2825 
SymbollpxK 
ID5613980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3413259 
End bp3414272 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content46% 
IMG OID640933744 
Producttetraacyldisaccharide 4'-kinase 
Protein accessionYP_001474560 
Protein GI157375960 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1663] Tetraacyldisaccharide-1-P 4'-kinase 
TIGRFAM ID[TIGR00682] tetraacyldisaccharide 4'-kinase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0571094 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCAT TTGTAAATCG TTTATGGTAT CCGAAAGGCT TTTTAGACAC TCAGTCTAAA 
GGCCTTTTTT TGCTGTTAAA AATAATTCAG CTGCTGCTTT TGCCACTCTC TCTCCTGTTT
GCAGCGATAA CCGCTCTGCG TCGTAGCTTA TTTAAGATAG GAATAAAAAA ACAATCCAGA
TTACCTGTGC CTGTCATCGT TGTCGGCAAT ATTACGGTGG GGGGAAGTGG TAAGACCCCC
ACGGTTATCT ATTTGGTTGA GCTATTAAGG CGACATGGGT ACCAACCTGG GGTTATTAGT
CGCGGATATG GGGTTAACTT TGAAGGGGTA AGAAGCGTAT TACCTTCGAT GGCGGCTCGG
GATGTGGGTG ATGAACCCGC CATGATCGTT GGCCGAACCG GAGTACCTAT GGTGATAGGT
CGCAATCGAA TCGATGCGGG AGAGCACTTA CTTACCCATT TCAATGTCGA CGTCATCATC
AGTGATGATG GGCTTCAACA TTACGCTTTA GGGCGAGATA TCGAGTTATT GATTTTAGAT
GGAGATCGAC GCTTCGGAAA CGGCTCACTA TTGCCCGCAG GACCCCTTAG AGAGGGGCTG
TGGCGCGTTA AAAAAGTGGA TGCAGTCGTG GTCAATGGCG GTCAGAGTAT TGAGGGGGAG
CACGCTATGA GTCTGGTACC GAGTGCGTTA AAGCCTGTCA CCCACTCTAA TGAACAGCCT
CCGGCTCTCA ATGATGCTGT GGTTGCCATT GCCGGTATCG GTAATCCACA ACGTTTTTTT
ACCTCACTGA TTAACGCGGG TTTTAATTTA AATGGTGTTA AGGCATTTGA AGATCATCAA
GCCTATTGCG AAGAGGAACT CACAGAACTC TGCGGTGATC TCCCCATCAT AATGACTGAG
AAAGATGCGG TTAAATGTCG CGATTTTGCA AAACAAAACT GGTGGTATCT TCCCGTTGAT
GCGAAGCTAT CCTCAAATTT CGATCGGCTG ATATTAGATA AACTAAAACG TTAG
 
Protein sequence
MQAFVNRLWY PKGFLDTQSK GLFLLLKIIQ LLLLPLSLLF AAITALRRSL FKIGIKKQSR 
LPVPVIVVGN ITVGGSGKTP TVIYLVELLR RHGYQPGVIS RGYGVNFEGV RSVLPSMAAR
DVGDEPAMIV GRTGVPMVIG RNRIDAGEHL LTHFNVDVII SDDGLQHYAL GRDIELLILD
GDRRFGNGSL LPAGPLREGL WRVKKVDAVV VNGGQSIEGE HAMSLVPSAL KPVTHSNEQP
PALNDAVVAI AGIGNPQRFF TSLINAGFNL NGVKAFEDHQ AYCEEELTEL CGDLPIIMTE
KDAVKCRDFA KQNWWYLPVD AKLSSNFDRL ILDKLKR