| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2825 |
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| Symbol | lpxK |
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| ID | 5613980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3413259 |
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| End bp | 3414272 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933744 |
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| Product | tetraacyldisaccharide 4'-kinase |
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| Protein accession | YP_001474560 |
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| Protein GI | 157375960 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1663] Tetraacyldisaccharide-1-P 4'-kinase |
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| TIGRFAM ID | [TIGR00682] tetraacyldisaccharide 4'-kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0571094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGGCAT TTGTAAATCG TTTATGGTAT CCGAAAGGCT TTTTAGACAC TCAGTCTAAA
GGCCTTTTTT TGCTGTTAAA AATAATTCAG CTGCTGCTTT TGCCACTCTC TCTCCTGTTT
GCAGCGATAA CCGCTCTGCG TCGTAGCTTA TTTAAGATAG GAATAAAAAA ACAATCCAGA
TTACCTGTGC CTGTCATCGT TGTCGGCAAT ATTACGGTGG GGGGAAGTGG TAAGACCCCC
ACGGTTATCT ATTTGGTTGA GCTATTAAGG CGACATGGGT ACCAACCTGG GGTTATTAGT
CGCGGATATG GGGTTAACTT TGAAGGGGTA AGAAGCGTAT TACCTTCGAT GGCGGCTCGG
GATGTGGGTG ATGAACCCGC CATGATCGTT GGCCGAACCG GAGTACCTAT GGTGATAGGT
CGCAATCGAA TCGATGCGGG AGAGCACTTA CTTACCCATT TCAATGTCGA CGTCATCATC
AGTGATGATG GGCTTCAACA TTACGCTTTA GGGCGAGATA TCGAGTTATT GATTTTAGAT
GGAGATCGAC GCTTCGGAAA CGGCTCACTA TTGCCCGCAG GACCCCTTAG AGAGGGGCTG
TGGCGCGTTA AAAAAGTGGA TGCAGTCGTG GTCAATGGCG GTCAGAGTAT TGAGGGGGAG
CACGCTATGA GTCTGGTACC GAGTGCGTTA AAGCCTGTCA CCCACTCTAA TGAACAGCCT
CCGGCTCTCA ATGATGCTGT GGTTGCCATT GCCGGTATCG GTAATCCACA ACGTTTTTTT
ACCTCACTGA TTAACGCGGG TTTTAATTTA AATGGTGTTA AGGCATTTGA AGATCATCAA
GCCTATTGCG AAGAGGAACT CACAGAACTC TGCGGTGATC TCCCCATCAT AATGACTGAG
AAAGATGCGG TTAAATGTCG CGATTTTGCA AAACAAAACT GGTGGTATCT TCCCGTTGAT
GCGAAGCTAT CCTCAAATTT CGATCGGCTG ATATTAGATA AACTAAAACG TTAG
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| Protein sequence | MQAFVNRLWY PKGFLDTQSK GLFLLLKIIQ LLLLPLSLLF AAITALRRSL FKIGIKKQSR
LPVPVIVVGN ITVGGSGKTP TVIYLVELLR RHGYQPGVIS RGYGVNFEGV RSVLPSMAAR
DVGDEPAMIV GRTGVPMVIG RNRIDAGEHL LTHFNVDVII SDDGLQHYAL GRDIELLILD
GDRRFGNGSL LPAGPLREGL WRVKKVDAVV VNGGQSIEGE HAMSLVPSAL KPVTHSNEQP
PALNDAVVAI AGIGNPQRFF TSLINAGFNL NGVKAFEDHQ AYCEEELTEL CGDLPIIMTE
KDAVKCRDFA KQNWWYLPVD AKLSSNFDRL ILDKLKR
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