| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2822 |
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| Symbol | |
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| ID | 5613977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3408850 |
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| End bp | 3411933 |
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| Gene Length | 3084 bp |
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| Protein Length | 1027 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933741 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001474557 |
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| Protein GI | 157375957 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000227615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.366957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTAA CCCGTTTAGC CATTAAGAGG CCCGTGACCA CCAGCATGTT TTTCGTGGCC
ATCTTACTGT TCGGTCTCGC TTCCAGCCGG TTATTACCAC TCGAGATGTT TCCCGGTATC
GACATGCCTC AGGTGAATAT TGAGGTGCCT TACAAGGGGT CGACCCCTGC CGAAGTTGAA
CGAGACATTA CCAGCGTGCT GGAGGAGTCT TTAGCGACCA TGGGTGGGAT CGAAGAGCTG
AGATCCAGCT CTTCACAAAA TGGCGCAGAG ATTGAGCTAA GAATGAAGTG GGGTCAGAAC
GTCGCCACTA AAAGCCTGGA AGCGAGAGAG AAAATCGATG CAGTAAGACA TCTGCTACCT
AAAGACGTTG AACGCGTCTT TATCAGACAG TTCTCTACCG CCGATATGCC GGTGCTTAAC
TTAAGAATAT CCAGTGACCG CGAGCTTTCC GGGGCATTCG ATCTCCTCGA CAAGCAGCTC
AAGCGTCCGC TTGAGCGTGT CGAGGGCGTG TCTCAAGTAA CGCTCTATGG CGTCGAGCAG
AAGCAGATAG AGATACGAGT TAATGCCGAT AAATTATCTG CGAGTAACAT CTCGATCCAA
GCCCTGACAC GCAGGCTGCA ACAGGAAAAC TTTGTCATCA GCGCCGGAAT ATTGAGAACC
GATTCCCGCG TCTATCAGGT CTCGCCTAAA GGAGAGTTCA GAAACCTCGA TGAGATTAGC
AACTTAGTCC TTACTCCGGG CGTGACCTTA GGCGATATCG CCACGGTCAG CTTCTCCCTG
CCGGAGCGAC TGGATGGTCG TCACTTAGAT CAAAACTACG CCGTCGGTCT CGATGTGTTT
AAGGAGTCCG GTGCCAACCT GGTCGAAGTC TCAAAACGCG TGATGAAAGT CATCGAGAAT
GCGAAGAAAG ATCAACAGTT TCAAGGCATC AAACTGTATG TAATGGAAGA TCAGGCCTAT
GGCGTCACCT CTTCACTGGA AGACCTGCTC ACAGCTGGCC TAATCGGTGC CCTGTTGTCA
TTTGCCGTGC TCTATCTGTT TCTACGCAAT CTGAAAATGA CCTTGGTTGT CGTGACCTCT
GTGCCAATCT CTATATGTAT GACACTTGCG GCCATGTATC TGCTTGGCTA CAGCCTGAAT
ATTCTCTCTA TGATGGGTTT GCTCCTGGCC GTGGGCATGC TTATCGATAA CGCCGTGGTG
GTGACTGAGA GTGTATTGCA GGAGAAACAG GCACAAGCCA AGGGACAATC TCTGGGACAA
AGTACCGACT CTTGTGACGA GCAAGACGAT GATGCAGTGC TCACCGGGGT CGATAAAGTC
GCCCTTGCGG TGCTCGCCGG TACACTCACG ACCGCTATCG TGTTCCTGCC CAATATCTTC
GGTGTGAAGG TCGAACTGAC TATCTTTCTC GAGCATGTGG CAATCGCTAT CTGTATCTCT
CTCGCCGCCT CTCTGTTAGT GGCTAAAACC CTGCTGCCAC TCATGCTGAG TCGTATGCAT
TTCGAAATAG ATACTCAGAA GAGAGAGAGT AAGTTGCGAA GCTATTATCA TCGCAGCCTG
AAATGGATTT TATCCCACCC GCGCATATCA GGCGTCATAG CCCTGTGCAT GCTCGCATCG
ACGGCATTGC CACTCAACAT GGTTAAGCAA GATCAATCTG ACGGTGAGGG AAACAACAAA
CTCTACATCA ATTATCAGGT CGAAGGGCGT CATAGTCTGG ATGTCACCGA AGCCATGATC
ACCAAGATGG AAGATTACCT TTATGCCAAT CAAGATAAAT TTCAGATAGA TTCTGTTTAC
AGCTACTTCT CGGCCGACCG TGGCCAATCT ACCCTGATCC TCAATGAAGA TGTTGAGATC
GACATGAAAG CCCTGAAGAA AAGCATACGA GAAGGCTTTC CGAAGTTTTC GATTGCCAAA
CCTCAATTTG GCTGGGGCAG TGACAACAAT GGACTCAGGG TATCGCTAAC GGGCCGCTCC
ACCAGCGATC TGATTAAGTT AAGTGAACAG GTGATCCCGT TACTTTCTTC GATAGAGGGG
TTAACCGATG TTAGATCTGA GCTCAGCGGT GCACAGCAGG AGGTGGTTAT CCGTGTCGAT
CGTGAGATGG CTGCCAGGCT AGACCTTAAG CTCAATGAAG TCGCCTCGAG TATCTCTATG
GCGCTTCGTG GGACGCAGCT ACGCTCTTTC CGTCACGATC CCAATGGAGA ACTGCGTATC
GAGATGTCGT TCGAGCAACA ATGGCGCCTG TCGCTTGAGA AGCTCAAACA ACTGCCGGTG
ATCAGAATTG ATAACCGTGT CTACACTCTG GACAGTTTGG CTAAAATTGA GATATTGCCT
CGATTTGACA CCATCAGACA CTACGACAGA CAAACGGCGC TATCGATCGG AGCCAACCTG
GATGACCTAA CCACAGAGGA AGCCCAGGAG AAGATAACTC AGGCGTTGGA GACGATAAAC
TTTCCGGCTG GATACGGCTA CTCCCTCAGG GGCGGTTTTC AGAAACAAGA TGAAGATGAG
GCGGTAATGG CGACGAATAT GCTGCTTGCG ATTGCCATGA TCTACATCGT TATGGCGGCC
CTGTTTGAAT CTTTACTGCT ACCAACTGCA ATTATCACCT CTATTCTGTT TTCAATAACC
GGTGTCTTTT GGGCACTGCT GTTTACCGGA ACCCCTATGT CTATTATGGC CATGATCGGT
ATCTTAATCT TGATGGGTAT TGTCGTGAAC AACGGCATCG TTTTAGTTGA CCAAATCAAT
CAGCTCTCAC CCGATTTAGA CAAGCTATCT GATACCATCA GTGAAGTGTG TCACTCGCGG
CTGCGGCCTG TATTAATGAC CGTTGGTACG ACAGTGCTCG GACTCGTACC TCTGGCTATG
GGAGACACTC AACTCGGTGG CGGTGGTCCA TCATATTCAC CTATGGCCAT TGCTATCATA
GGTGGATTGA CGTTCTCAAC CGTGACCAGC TTATATCTGG TTCCACTTTG CTATCAGGCG
CTATACAGAA TGCGATTCCG TGCGGCGATT AAACTGGGCC AGGCAGATCG CGTATCCAGA
CGTCTGCTGC CATGGACACA ATAG
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| Protein sequence | MNLTRLAIKR PVTTSMFFVA ILLFGLASSR LLPLEMFPGI DMPQVNIEVP YKGSTPAEVE
RDITSVLEES LATMGGIEEL RSSSSQNGAE IELRMKWGQN VATKSLEARE KIDAVRHLLP
KDVERVFIRQ FSTADMPVLN LRISSDRELS GAFDLLDKQL KRPLERVEGV SQVTLYGVEQ
KQIEIRVNAD KLSASNISIQ ALTRRLQQEN FVISAGILRT DSRVYQVSPK GEFRNLDEIS
NLVLTPGVTL GDIATVSFSL PERLDGRHLD QNYAVGLDVF KESGANLVEV SKRVMKVIEN
AKKDQQFQGI KLYVMEDQAY GVTSSLEDLL TAGLIGALLS FAVLYLFLRN LKMTLVVVTS
VPISICMTLA AMYLLGYSLN ILSMMGLLLA VGMLIDNAVV VTESVLQEKQ AQAKGQSLGQ
STDSCDEQDD DAVLTGVDKV ALAVLAGTLT TAIVFLPNIF GVKVELTIFL EHVAIAICIS
LAASLLVAKT LLPLMLSRMH FEIDTQKRES KLRSYYHRSL KWILSHPRIS GVIALCMLAS
TALPLNMVKQ DQSDGEGNNK LYINYQVEGR HSLDVTEAMI TKMEDYLYAN QDKFQIDSVY
SYFSADRGQS TLILNEDVEI DMKALKKSIR EGFPKFSIAK PQFGWGSDNN GLRVSLTGRS
TSDLIKLSEQ VIPLLSSIEG LTDVRSELSG AQQEVVIRVD REMAARLDLK LNEVASSISM
ALRGTQLRSF RHDPNGELRI EMSFEQQWRL SLEKLKQLPV IRIDNRVYTL DSLAKIEILP
RFDTIRHYDR QTALSIGANL DDLTTEEAQE KITQALETIN FPAGYGYSLR GGFQKQDEDE
AVMATNMLLA IAMIYIVMAA LFESLLLPTA IITSILFSIT GVFWALLFTG TPMSIMAMIG
ILILMGIVVN NGIVLVDQIN QLSPDLDKLS DTISEVCHSR LRPVLMTVGT TVLGLVPLAM
GDTQLGGGGP SYSPMAIAII GGLTFSTVTS LYLVPLCYQA LYRMRFRAAI KLGQADRVSR
RLLPWTQ
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