| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2803 |
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| Symbol | |
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| ID | 5613638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3385242 |
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| End bp | 3386537 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933722 |
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| Product | cytosine deaminase |
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| Protein accession | YP_001474538 |
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| Protein GI | 157375938 |
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| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.189731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAGCTT CGAATATGCT GATCAAAAAC ATTAGGCTTC AAGACAAGGA TGGTCTGCAT
CAGATCTTGA TTGAAGAGGG AATATTCCAA CGAATAGCTG TGATGTCTGA AACCATAACT
CTCAGCGAAC CAGCCACCAC AGAGATGTTA GATGGTGAAG GCGGCTTAGC TATCGCCCCT
TTCTGTGAAC CTCATGTTCA CTTAGATACC ACCCAGACCG CAGGTGAGCC AAGCTGGAAC
ATTTCAGGCA CCCTATTTGA AGGCATTGAG CGTTGGAGCG AACGAAAATC ACAGCTCTCT
ATCGAAGATG TGAAATCCCG CGCGAAGCAG ACGCTTAAAT GGCAGATAGC CAATGGTATT
CAGCATGTCA GAACCCATGT CGATGTCTCC GACCCGACCC TCATAGCCCT GAAGGCCATG
TTAGAGGTGA AGGAGGAGAT GAAGGAGTGG GTCGATATTC AGATTGTCGC CTTCCCTCAG
GAGGGGATCT TATCTTATCC CAATGGTAAG GAGCTGCTCG AAGAGGCGGT AAAGCTCGGG
GCCGATGCCA TTGGCGCCAT CCCCCATTTC GAGTTTACCC GCGAATATGG TGTCGAGTCC
CTGCACTACG TATTCGAACT GGCCCGTAAA TATGACAGAC TCATCGATGT CCACTGTGAC
GAGATAGATG ATGAGCAGTC ACGTTTCGTC GAAACCGTCG CCGCCCTGGC CCATAAATTT
GATATGGGTG AGCGTGTAAC GGCGAGCCAT ACTACGGCCA TGCACTCCTA CAACGGTGCC
TATGCGTCTC GCCTGTTCCG TCTGCTTAAG ATGTCAGGGA TAAATTTTGT GGCCAACCCA
CTGGTTAACA TACATCTTCA GGGACGTTTC GACGATTATC CTAAACGCCG CGGCATCACC
AGGGTGAAAG AGATGTTAGC CGCAGATATT AATGTCTGCT TCGGCCATGA TGATATCTTC
GATCCCTGGT ATCCGCTTGG TACGGCTAAC ATGCTACAGG TACTACATAT GGGCCTGCAT
GTGTGTCAGA TAATGGGATA CGAGCAGATA AATGACTCCT TGGCCCTTAT CAGCAGCAAG
TCGGCGCGCA CGCTCAATAT TCAGGACCAA TATGGCATCG AATCAGGAAG ACCCGGTAGC
CTGCTTATTC TCCCCGCAGA TAATGGTTTC GATGCCGTTC GTCGCCAAGT CCCGGTGCGC
TTCTCGATAC GTCACGGCAG AGTCTTAGCT CAGACACAAA TCGCGACCAC TCAGATACAT
CTGACAGAAA CCGAAGAGGT TACCTTTCGT CGTTAA
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| Protein sequence | MPASNMLIKN IRLQDKDGLH QILIEEGIFQ RIAVMSETIT LSEPATTEML DGEGGLAIAP
FCEPHVHLDT TQTAGEPSWN ISGTLFEGIE RWSERKSQLS IEDVKSRAKQ TLKWQIANGI
QHVRTHVDVS DPTLIALKAM LEVKEEMKEW VDIQIVAFPQ EGILSYPNGK ELLEEAVKLG
ADAIGAIPHF EFTREYGVES LHYVFELARK YDRLIDVHCD EIDDEQSRFV ETVAALAHKF
DMGERVTASH TTAMHSYNGA YASRLFRLLK MSGINFVANP LVNIHLQGRF DDYPKRRGIT
RVKEMLAADI NVCFGHDDIF DPWYPLGTAN MLQVLHMGLH VCQIMGYEQI NDSLALISSK
SARTLNIQDQ YGIESGRPGS LLILPADNGF DAVRRQVPVR FSIRHGRVLA QTQIATTQIH
LTETEEVTFR R
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