| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2799 |
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| Symbol | |
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| ID | 5611440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3379680 |
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| End bp | 3381884 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933718 |
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| Product | nitrate reductase |
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| Protein accession | YP_001474534 |
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| Protein GI | 157375934 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0851567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTTTG GTCGCAAGAA GAGAAAGCCG ATTGCAATAC CCGCCAAGAA GGTGGCAGAG
TGGAAATACA CCACCTGTAA TTATTGCTCT ACGGGCTGTT CCATCGAGAT AGGTTTAGAT
GAGCAGCAAA AGATAGTGAC GACACGAGGT CATGCCGGCG CCGATGTTAA CCGTGGCAAA
TTATGCATTA AAGGCATTCT TGAGCATGAG CTGTTCGATA GCCCGGGCCG AGGCACTGAG
CCGCTTATTC GTGATAAACA TTTTAACCCT TTTAAGCCCA CCTCCTGGGA CCATGCGCTG
GATACCACGG CGCAGCAGAT AAAACATATT CAGCAAAAAT ATGGCCGTGA TGCCTTCGCT
ATCGTCTCGT CGGGTCAGTT GTTGACTGAA GAGTTTTATA CCTTAGGCAA GTTAGCCCGT
GGCGTTATCG GCACCAATAG CTATGACGGT AACACCACCT TATGTATGGC ATCGGCGGTG
AGCGGTTATA AACGCTCATT CGGCGCAGAT GGACCGCCGG GTTGCTATGA TGATTTTGAG
CATACCCACT GTTTAATCGC ATTTGGCTCC AACCTTCCCG AGCAACACCC CATCATCTAT
TGGCGTCTCA AGGAGGCACT GGAGAAGCGT CACTTCCCCT TAATTGTGGT CGACCCCCGC
GTGACCATGT TGGCGCAATT TGCCGATATT CATCTGCCCA TCACACCGGG CACGGATTGC
GTGCTGATCA ACGCCATGAT GCATGTGATC ATTAACGAAG GCCTGCAAGA TCAGAACTAT
ATCGATGCCC ACACTCAGGG TTTCGATGAG GTTAAGGCGC TGGTTCAGGA CTACAACCCT
AAGCAGGCAC AAGATGTGTG CGGTATCGAT GAAGATACCA TACGTAGTGT TGCCCGTATC
TATGCTAAGG CGCCGACGGC CATGAGTATC TGGACCATGG GCATTAACCA ATCGACCCAT
GGCTCAGATG GCGTTGCCAA CATTAATAAC CTGAATATGG TGACCGGTAA TATTGGTAAG
CCGGGGGGCA CCAGTTTGTC GATCACGGGT CAGTGCAATG CCATGGGCAC CCGTGAATGG
TCATCCTGCT CCGGGCTGCC CGGTTATCGC TACCTTGAAA ATGAAGCCGA CAGGAATGAG
ATAGCCGAGT TCTGGGGCAT AGATCCTGAG TTCTTTCCCA AGAAGCGTGG TCTCTCACAA
ACCGATATCT TTGCGGCCAT CGAAACCGGC GAGATAAAGG GCTTATGGAT CGTCGCGACC
AACCCCATGA CCTCAATGCC CAATACCGCG CGCATTAGAA AGGCACTGGA GAAGCTGGAT
TTTTTGGTGA TCCAGGATGT CTATCAAGAT GTGGAAACCA ACCAATATTC CCACGTCTAT
CTTCCCGCAT CGGTCTGGGC TGAAAAGGAG GGGGTACACA CCAATACCGA ACGCCGGGTT
AACCTTATTA ACAATGTGAT GCCCCCCTTT AAAAATGCCA AGCCGGATTT TTGGATCTTC
AATCAAATGG CCAAGCGGTT CGATAACGGT CAGATGATCC ATTTTCCCGA GGCGCCCGAA
GGGGCGTTCG AAGAGATGAA ATACCTATCA AAGGGCAGGC TGGCCAATGG TCAGCCGAGG
CAGTTAGATA TCTCAGGCAT GAGCTACGCC AAATTGGAGG CGGCCAAAGG GATCCAGTGG
CCATACCGGG AGTATGAGGT CGGTCTTAAG GGGATCGCGA GACTCTACAG CGATGGTATT
TTTCCGACGC CCAATGGTAA AGCCAACCTG CTGCCAATCA GCTTTTATAA CAACAACGAG
CAACCCTGTC AGGCATATCC GTTTTGGCTC AACAGTGGGC GTGTGGTGGA GCATTTTCAT
ACCCGCACCC GCACCGGAAA AATCGGCAAC TGCAATAAGT TCAGTCCAAC CGCTTACATG
GAGATGAACC CGGATGCGGC GCAGGCCTTG GGTGTCGAGC ACCAAAGTTA TGTTCGTCTC
ACCAGCCGCC GCGGGGACGC CGTCGTACTG GTGCAACTGA CCCAAAGAGT GCCGCGCAAC
ATGGTGTTTA TCCCGTTTCA TTTTCACGAC TGCGTGAACC GCTTAACTCT GGGGCTGCTC
GACCCACACT CGAGGCAGCC GGCATTTAAA CAGTGTGCAA CCCGTATCGA ACCTATCGAA
CAGGCCGAGG CCGCACGCAT CAATGCAGAG CGCCGCGCGT TTTAA
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| Protein sequence | MLFGRKKRKP IAIPAKKVAE WKYTTCNYCS TGCSIEIGLD EQQKIVTTRG HAGADVNRGK
LCIKGILEHE LFDSPGRGTE PLIRDKHFNP FKPTSWDHAL DTTAQQIKHI QQKYGRDAFA
IVSSGQLLTE EFYTLGKLAR GVIGTNSYDG NTTLCMASAV SGYKRSFGAD GPPGCYDDFE
HTHCLIAFGS NLPEQHPIIY WRLKEALEKR HFPLIVVDPR VTMLAQFADI HLPITPGTDC
VLINAMMHVI INEGLQDQNY IDAHTQGFDE VKALVQDYNP KQAQDVCGID EDTIRSVARI
YAKAPTAMSI WTMGINQSTH GSDGVANINN LNMVTGNIGK PGGTSLSITG QCNAMGTREW
SSCSGLPGYR YLENEADRNE IAEFWGIDPE FFPKKRGLSQ TDIFAAIETG EIKGLWIVAT
NPMTSMPNTA RIRKALEKLD FLVIQDVYQD VETNQYSHVY LPASVWAEKE GVHTNTERRV
NLINNVMPPF KNAKPDFWIF NQMAKRFDNG QMIHFPEAPE GAFEEMKYLS KGRLANGQPR
QLDISGMSYA KLEAAKGIQW PYREYEVGLK GIARLYSDGI FPTPNGKANL LPISFYNNNE
QPCQAYPFWL NSGRVVEHFH TRTRTGKIGN CNKFSPTAYM EMNPDAAQAL GVEHQSYVRL
TSRRGDAVVL VQLTQRVPRN MVFIPFHFHD CVNRLTLGLL DPHSRQPAFK QCATRIEPIE
QAEAARINAE RRAF
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