| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2730 |
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| Symbol | |
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| ID | 5611241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3296284 |
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| End bp | 3297891 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933649 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001474465 |
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| Protein GI | 157375865 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.928628 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCTT CAGATTTAGA TTTAGGGCGT GTTTTTTCTT TTAATCCTAA AGGAGGAAAC
ATGCAGTTTA TGGGGCATCG AGCCCTTATC GTCGATGCTA TGGCGATGGG CTTGTTGCGC
AAAGAACTCA TCGAGAATAT CGGGACTTTC GCCGCCCGCA ATATATTAAC CAGAATGGGT
TATGCCCATG GTTGGAGTAC GGCAGACAAT CTGGACCGGG AGTATAACGA CTCACTCCAG
GATCCGGACT TTGGACCTAC CCTGCACAAA TTGCAGGGAA TGGTGAATAT CGCCAAATGT
GATTGGACTT TTGAACCCGT GTTTCATGCT GATATTTTTT GGGAGGACTC CTATGAGTCT
GAGCAACAAA TTTTGCATCT GGGCATGGCC AGCGAGCCGG TTTGTTGGAC ATTGACAGGC
TACGTCAGCG GTTATTGTTC ACGCATGCTC GGGGAAGAGG TGTACTGCAT CGAGCATCAA
TGTCACGCCA AGGGGGATGC ATTGTGCCAT GCTGAGGTCA GAACAAAAAA AGAGTGGGGA
GAGGAGATCG AACCGTACTT ACCCTTTTTC CAGGCAGACA CAATAGATAA AGTGCTGCAT
GAAGTCACCA CCAAGCTTAC CAACGCCGAA AAAAAGATAA ATTTGCGCAC ACAGTTCGCA
GAGAGTGAGA GTGCAGGCGG TATTGTTGCC AGAAGTAAGG CAATGCGCAA AACCCTGGAT
TTTGCCAGAC GAATAGCCAA AGTTGAGTCT TCGGTGATCA TCACAGGTGA AAGTGGCGCT
GGCAAAGAAA AAATAGCCAA ATTGATCCAC GGCGAATCGG GCCGGGCACT CAGATCATTT
GTGGCAATCA ACTGCAGCGC TGTTACAGAG ACGCTGCTTG AGAGTGAGTT TTTTGGGCAT
GCTAAAGGTT CATTCACCGG CGCAAACAAA GACAGGATTG GTTTATTTGA AGCCGCCAAT
GGCGGTACCC TGTTTCTGGA TGAGATAGGC GAGCTCTCGG CAAGTATGCA GGCGAAGTTA
CTTCGTGTTC TGCAAGAGAA AGAGATCCGA AGAGTGGGGG AGAATAGTCC GCGCGCGGTT
GATGTACGGA TCGTCGCAGC AACCAATCGT CATCTTGCTA AAGAGGTTGC TGCGGGCAAT
TTTCGTGAGG ACCTATATTA TCGGTTATGT ATATTCGAGC TCGAGGTCCC GGCGTTACGA
GAACGTCCCG AAGACATTTT AGTGTTATCC CGTCATTTTC TCGAGCGGAC ATCACATAAA
ATTGGCAAAG AGGTTATCGG TTTTTATCCG GAAGTTACCG AACGTCTATT GCAATTTAAT
TGGCCCGGTA ATGTCAGACA GTTGGAAAAT ACTATCGAGC ATGCTGTTGT TATGTGTCAA
AGGAAAAGGA TCAAACTTGA GGATCTTCCA CGGGGTCTGG ATATGGTTGA GATATCTCAG
CCAAAGGAGT TGTCTATTAG AAGAATTGAT GACATCGAGC GCGAACAAAT ACTCTCAGCG
CTTAAGCTGC TTAACGGTAA TAAGGCTGAA GTGGCCAAGA GATTGGGGAT TAGTCTTTCT
TCTTTATACC AAAAAATCAA AAGATATAAA TATCAGGGGC AAGAATAA
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| Protein sequence | MKASDLDLGR VFSFNPKGGN MQFMGHRALI VDAMAMGLLR KELIENIGTF AARNILTRMG
YAHGWSTADN LDREYNDSLQ DPDFGPTLHK LQGMVNIAKC DWTFEPVFHA DIFWEDSYES
EQQILHLGMA SEPVCWTLTG YVSGYCSRML GEEVYCIEHQ CHAKGDALCH AEVRTKKEWG
EEIEPYLPFF QADTIDKVLH EVTTKLTNAE KKINLRTQFA ESESAGGIVA RSKAMRKTLD
FARRIAKVES SVIITGESGA GKEKIAKLIH GESGRALRSF VAINCSAVTE TLLESEFFGH
AKGSFTGANK DRIGLFEAAN GGTLFLDEIG ELSASMQAKL LRVLQEKEIR RVGENSPRAV
DVRIVAATNR HLAKEVAAGN FREDLYYRLC IFELEVPALR ERPEDILVLS RHFLERTSHK
IGKEVIGFYP EVTERLLQFN WPGNVRQLEN TIEHAVVMCQ RKRIKLEDLP RGLDMVEISQ
PKELSIRRID DIEREQILSA LKLLNGNKAE VAKRLGISLS SLYQKIKRYK YQGQE
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