| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2703 |
|---|
| Symbol | |
|---|
| ID | 5612810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3268033 |
|---|
| End bp | 3268548 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933622 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474438 |
|---|
| Protein GI | 157375838 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3860] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA ATCTGACCCC TTTTAGCTGT GACGATATCT CTTCGTTGGC TAAATCGTTA
CGTAAACAGT TGCAACAACA TGAGTCGTTT CCTAGCCATG TAGAGATGCT AAATATCCTG
GCCAAAGCGA CGGGTTTACA AAACTTCCAG CAATTGCGTC AGCAGCACGC TGAACAATTA
CCTTCGCAAT CCAGTCTATC TGTCCCTATT CCTAAACGGC TGATGCCCTT TATGAGTGGG
GACTACATCA TGCATACCTG GCCTTCGAAG TATGCTATCC AGCAACAAAG TTTGTGGTTT
TTCTGGTGTC GGTTTCAGTA CCAACAAAGC TACAGCGAAC GGCAAGTTAA TGAGATCTTA
AAGAACTTCC TCGACTTTGA GGATTTTGCT CTGATCCGCC GAGAGCTTTG CAACCATAAA
CTGCTTAAAC GCACCGATGA TGGCCGCACT TATTGGCGTG CATCGGCAAC GCCTCCCGAA
GGTTTTGAGT CTCTGGCCGA TTTTTGGCCT AACTAA
|
|---|
| Protein sequence | MSKNLTPFSC DDISSLAKSL RKQLQQHESF PSHVEMLNIL AKATGLQNFQ QLRQQHAEQL
PSQSSLSVPI PKRLMPFMSG DYIMHTWPSK YAIQQQSLWF FWCRFQYQQS YSERQVNEIL
KNFLDFEDFA LIRRELCNHK LLKRTDDGRT YWRASATPPE GFESLADFWP N
|
|---|
| |