| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2675 |
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| Symbol | |
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| ID | 5612240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3232271 |
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| End bp | 3233404 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933594 |
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| Product | lytic murein transglycosylase |
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| Protein accession | YP_001474410 |
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| Protein GI | 157375810 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00742108 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0400647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGGCCA GCGCCGATGA CTTTGCCTCT TGTGTTATTA AACTTAAAGA GACCGCGCAA
GCGCAAGGGC TATCGAGAGA CACCATAGAC AACACCTTGG CAAAGGTAAA ATATATCTCT
CGAGTTATCG AGTTAGATAA GAAACAGCCG GAGTTTAGCC AAACGTTCGA TAACTATTTC
AGCAAAAGGG TGACCGACTG GCGCGTGAAG GAGGGGAGAA AGTTACTAAA AGAGAACCGA
GAACTCCTCA ATGAATTATC ACAGAAATAC GGAGTACCGC CACAATATCT GATGGCGTTT
TGGGGGCTGG AAACTAACTT CGGCTCTTAT AAAGGGAAAA TGCCGGTACT CGACTCTTTA
GCTACACTGG CCTGTGATCC TCGCCGTAGT AAATATTTCA CCGGCGAATT GATGAAAGCC
TTGAAGCTTA AAGAGGAGTA TCAGTTTGAG TCCTCACAGA TGGTTGGCTC ATGGGCCGGT
GCTATGGGCC ACACACAATT TATGCCTAGT GCTTATGCAA AATATGCCGT CGATGGAGAT
GGCGATGGTA AAGCCGACCT TTGGAACAGC ACCACAGACG CATTGACCTC AGCGGCAAAC
TTTTTAAATC AACTCGGCTG GCAACGTAAT GAACGTTGGG GCCGTGAAGT CAAACTGCCA
AAGGATTTCA GTTATGGATA CCTGGGTAAG GACAAGGCTC AACCTCTGGC CGAGTGGGCA
AAGCTTGGGG TGACTAAGAG TGATAAGACC TCTTTGTCTA CACCGGATAT GAACGCCGCA
CTCTATCTGC CAGCGGGGCA TACCGGTCCG GCATTTCTTG GCTACAAGAA CTTTGATGTG
ATCATGCGAT GGAATCGTTC TGTGTATTAC GCCATTGCGG TTGGGCATCT GGCTGACAGA
ATCAATGGGG GGGTAAGTTT GGCCGTTAAG CCACCCAAGC AGGACAACTT AAGTCGAGCG
CGTGTCAAGT CGTTGCAGGC TAAGTTAAAT GAGAAAGGGT TCGATGTAGG AAAGCCTGAC
GGCGTGATGG GCAGGAACTC CAAAACCGGA TTAAGAGCGT TTCAACTGAG CGTTGGGCTG
GTTGCAGATG GTTTTCCAAG TGAAGCTACC TTTAAGGCTT TAGGCGTTAT TTAA
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| Protein sequence | MPASADDFAS CVIKLKETAQ AQGLSRDTID NTLAKVKYIS RVIELDKKQP EFSQTFDNYF
SKRVTDWRVK EGRKLLKENR ELLNELSQKY GVPPQYLMAF WGLETNFGSY KGKMPVLDSL
ATLACDPRRS KYFTGELMKA LKLKEEYQFE SSQMVGSWAG AMGHTQFMPS AYAKYAVDGD
GDGKADLWNS TTDALTSAAN FLNQLGWQRN ERWGREVKLP KDFSYGYLGK DKAQPLAEWA
KLGVTKSDKT SLSTPDMNAA LYLPAGHTGP AFLGYKNFDV IMRWNRSVYY AIAVGHLADR
INGGVSLAVK PPKQDNLSRA RVKSLQAKLN EKGFDVGKPD GVMGRNSKTG LRAFQLSVGL
VADGFPSEAT FKALGVI
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