| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2650 |
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| Symbol | |
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| ID | 5612683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3204695 |
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| End bp | 3205510 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933569 |
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| Product | aminotransferase, class IV |
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| Protein accession | YP_001474385 |
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| Protein GI | 157375785 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.23684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGAAG TTTGGGTGAA TGGGAAACAA GACTGCCAGA TTGATCCGTT TGAACGTGGA
TTAGCCTACG GTGACGGACT GTTTGCGACC ATGCGTTTCA GTGGTGGTGA GGTCTTGTTT
TTACGGGCCC ACTTGCAGAG GCTGACTCAG GGCGCGAAAC GGTTAGGTTT CGACTGGTGC
GCCAGTGATC CGCTTATTGC CCAGATGAAC CACCTCGCGA TGACCCATGG AGATGGCTGT
ATTAAGCTAT TACTCGGCCG GGGCGTCGGC GGACGAGGCT ACGCTGCGCC AGCCTCCGCG
ACCATTACCG AAATCGTCTC GCTTCATGCT ATCCCCTGCC ATTATTCACA ATGGCAAAGT
GATGGAATAT CGTTGAAGAG CAGCGATGTT AAGCTGGCAC ATCAACCCTT GCTAGCCGGT
ATTAAACATC TCAATCGCCT CGAGCAGGTA CTAATAAAAT CAAAGCAACT CGCTTCAGGT
TTTGATGATT GGCTAGTGAT GGATCAAAAG CACAATGTTA TTGAGTCATC GATGGCCAAC
CTGTTTCTGG TTGATGGTAA TAAAGTCGTC ACACCAAGCA TTGCTTTGGC GGGGGTTGCC
GGAGTGATGA GAGAGCAGGT CATCTATGCA CTCATAGATC GAGGTTTCGA TCTGCATATT
ACTGACGTTA GCTATCAGCA ACTGTCTCAA TTTGAGCATG GGTTTATTAC TAATAGCCTG
TTTGGCCTTG TCGATATTAA CCGAGTCGAT GACCTTACCT TTGAGCGGTC ACCTTTTACA
GATTCAATAA GACACTCTTT GCACCTTACC TTATGA
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| Protein sequence | MTEVWVNGKQ DCQIDPFERG LAYGDGLFAT MRFSGGEVLF LRAHLQRLTQ GAKRLGFDWC
ASDPLIAQMN HLAMTHGDGC IKLLLGRGVG GRGYAAPASA TITEIVSLHA IPCHYSQWQS
DGISLKSSDV KLAHQPLLAG IKHLNRLEQV LIKSKQLASG FDDWLVMDQK HNVIESSMAN
LFLVDGNKVV TPSIALAGVA GVMREQVIYA LIDRGFDLHI TDVSYQQLSQ FEHGFITNSL
FGLVDINRVD DLTFERSPFT DSIRHSLHLT L
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