| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2633 |
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| Symbol | |
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| ID | 5613160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3183984 |
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| End bp | 3184961 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933552 |
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| Product | lysozyme |
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| Protein accession | YP_001474368 |
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| Protein GI | 157375768 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000151513 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACAAAA GGCGCGCCAT GAATACCGAA GCACCCAAAT CTAAAGTCCA GCTGGTCACA
ATCGACGAAG ATAATGTTGG ACAACGTATA GACAATTTCC TACTGACAAA ACTAAAAGGT
GTGCCTAAAA GCATGATCTA TCGGATCGTG CGTAAAGGCG AGGTCAGGGT TAATAAAAAA
CGAATTAAGC CTGAGTATAA GTTACAAGAT GGCGATATTG TTCGGGTGCC ACCAGTGCGC
ATGGCCGATA AAGAGGAGCG ACCGGGTCCT TCAGCAAAAC TGAGTAAAGT GTCTCAATTA
GAAGACCGTA TTTTATTTGA AGATAAACAC CTCATTGTCT TGAATAAGCC TGCAGGGCTT
GCCGTTCACG GTGGAAGCGG TGTCGATTTC GGCATTATCG AAGCCATGCG TTCGCTTCGG
CCTACTCAGA AGTTCCTGGA GCTGGCACAT CGCTTAGACA AAGATACCTC TGGGGTATTA
CTTATTGCAA AGAAGCGTAG CGCACTGCGA CATCTACACG ATCAGCTTCG TTTTAAGAAG
ATGCAAAAAG ATTATCAGGC TCTGGTTAAA GGGACTTGGC AAGCTCGGGA TAAGGCCATT
AAAGCACCTT TGCTTAAATT AACCCTCAAA TCCGGTGAGC GTATAGTCCG CGTCAATCAA
GAGGGAAAAG AGTGTGAGAC CCGCTTCAAG ATTATTCAGC GCTATCAAGG CTCAACCTTA
GTTCAGGCTA GCCCAGTGAC GGGAAGAACG CATCAAATTC GTGTTCACTG CCAGTATACC
GGTCATCCAA TCGCTTGCGA TGAAAAATAC AGTGAGCAAA AGTATGATGA CAGCATAAGA
GCGTTGGGGC TTAATCGTTT GTTTCTGCAT GCCGCACAAC TTAGGTTTAC TCACCCGGGA
ACAGAAGAGG TGATGATAGT CAAAGCGCCT TTGGATCCAG TCCTCATTAA AACATTAGAT
AAATTGGTCA AAGTATGA
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| Protein sequence | MYKRRAMNTE APKSKVQLVT IDEDNVGQRI DNFLLTKLKG VPKSMIYRIV RKGEVRVNKK
RIKPEYKLQD GDIVRVPPVR MADKEERPGP SAKLSKVSQL EDRILFEDKH LIVLNKPAGL
AVHGGSGVDF GIIEAMRSLR PTQKFLELAH RLDKDTSGVL LIAKKRSALR HLHDQLRFKK
MQKDYQALVK GTWQARDKAI KAPLLKLTLK SGERIVRVNQ EGKECETRFK IIQRYQGSTL
VQASPVTGRT HQIRVHCQYT GHPIACDEKY SEQKYDDSIR ALGLNRLFLH AAQLRFTHPG
TEEVMIVKAP LDPVLIKTLD KLVKV
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