| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2631 |
|---|
| Symbol | |
|---|
| ID | 5613616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3181823 |
|---|
| End bp | 3183226 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933550 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001474366 |
|---|
| Protein GI | 157375766 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00523199 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000140332 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA TAGAAGAAGC ATTAGCGCTA CTCGCGGCTC CTTGTACCGA TGAGCGTTTT
TTCCAACGAG CCTTAAAGGC ACTCGCACTG GTGACGCAGT GTCGGTGGGC TGCTTTTGGA
AGACCCTCAG AGAACAGAGG TATGGCTGAA GTTGTTGCCT TTTGCGATCT AAAACACAGT
ATTCCCGGCT TTGAGTTCGA CCTTAAAGGC TCTCCTTGCG AAACAATTTA CCAACTCAGA
TATCCCGATA CTCATATTCT TTACCCCAAG GATCTTCAGT CGCTATTTCC GAATTTTCAA
TTAATTAAAA ATTTAGGAGC TAATAGTTAT CAGGCTGAGC TTATATTGGC CGACGATGGC
ACCCCCATAG GCCACATATT AGTCATGGAC ACAGAGCCTC AGGCAGACTC CATCAAATCC
CGGGAGTTTT TCAGACTGCT GGCACAGAGG ATCGGGGTTG AGTATAAAAG GCTGCTCATC
TCCCGTGAAC TTGCCTTACA TAAACAGATG ATCGCCGTTT CAGAGCAATT TATGTCATTT
GTCGATAATA ATTACCGCTA TCACGTTGTC TCAAAGGGCT ACGAGACCAT GTTTGGTCGT
GCCGTGCAGG AGTTCGTAGG AAGAACTGTT GAAGAGATCC ATGGAGAGGA AGTATTTAGT
CAACATTTAA AACCTCTGCT GGATCGCTCA TTAGCGGGTG AAACCATTAA TACACAAACC
TGGATCCACC CGCCTAATCA AAACTCCCCC ATGTACCTCA ATGTTCACCA TAACCCCTAC
TACAGTGATA GTGGCGATCT CATTGGAGTG ATTGTCTCTG CCCATGATAT TAGTGAGATC
CATGCCGCAA AAGTAGAGAT AGAACACTTT GCCAATCACG ACCCTCTCAC CGGATTAGCC
AATAGACGGG CGTTATTCGA AGCTATTCAA CACAAAATTA ACGCCCAAAA GGCCGGCCAA
CTGCAGTTAG CCGTTATGTA TATCGACTTG GATGGTTTTA AACAGATCAA CGACAGATTC
GGACACCACC AGGGAGACAA GGTACTCGTA GACGTTGCCA CTCGCATTCA AGATTGCGCA
GGCTCGAATG AGCTTATCTC TCGAATAGGA GGCGATGAAT TTGTTGTACT GACAAGTTTT
GCCTACGGCC TGCCACAATC CAGCTATCAA GCAGAGCTGG AGGCGCTTAG CGAACGATTA
TTAGTCCAGC TAAGGATGAA TATTGAAGTA AATGGGCAAC ACTTGCCAGT AAGCGCCAGT
ATCGGAAGTT ATATTGCAGA TGATGACGAT AGCGATCTAT CGGCTATCAT CTGTAAGGCT
GACAAAGAGA TGTATAACGC GAAAAAAGCT AAATGTAACT TATGTACAGA AGAAGATGCA
CACCATGATC CGGACTTGGG CTAA
|
|---|
| Protein sequence | MADIEEALAL LAAPCTDERF FQRALKALAL VTQCRWAAFG RPSENRGMAE VVAFCDLKHS
IPGFEFDLKG SPCETIYQLR YPDTHILYPK DLQSLFPNFQ LIKNLGANSY QAELILADDG
TPIGHILVMD TEPQADSIKS REFFRLLAQR IGVEYKRLLI SRELALHKQM IAVSEQFMSF
VDNNYRYHVV SKGYETMFGR AVQEFVGRTV EEIHGEEVFS QHLKPLLDRS LAGETINTQT
WIHPPNQNSP MYLNVHHNPY YSDSGDLIGV IVSAHDISEI HAAKVEIEHF ANHDPLTGLA
NRRALFEAIQ HKINAQKAGQ LQLAVMYIDL DGFKQINDRF GHHQGDKVLV DVATRIQDCA
GSNELISRIG GDEFVVLTSF AYGLPQSSYQ AELEALSERL LVQLRMNIEV NGQHLPVSAS
IGSYIADDDD SDLSAIICKA DKEMYNAKKA KCNLCTEEDA HHDPDLG
|
|---|
| |