| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2619 |
|---|
| Symbol | |
|---|
| ID | 5610675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3172222 |
|---|
| End bp | 3173097 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640933538 |
|---|
| Product | 6-phosphogluconate dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_001474354 |
|---|
| Protein GI | 157375754 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000383658 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000335246 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG TAGCATTTAT CGGTCTGGGT GTAATGGGTT ACCCAATGGC TGGTCACTTG
GTTAGCAATG GGCACGATGT CACCGTATAC AATCGTACTG TTGGTAAGGC TGAGGCTTGG
GTAAACGAAT ATGACGGACA ATCCAAATCT AGCCCTGAGC TTGCAGCACA GGGGCAGGAT
TTTGTCTTTA TCTGTGTCGG TAACGATGAC GATCTGCGTG ATGTGACCTT AGGTGAAGCG
GGCGTGCTCA AAGGAATGGA GGCGGGAGCG ATTCTTGTCG ATCATACGAC AGCCTCTGCC
GATGTAGCCC GAGAGATAGG TGAAGTGGCA TCACAATCCG GGATCGGCTT TCTGGATGCG
CCGGTGTCTG GCGGACAAGC TGGTGCCGAG AATGGCGTGC TGACCGTGAT GACAGGCGGT
GATCCGGAGA TATTTGAGCA AGCCAAACCC ATTATCGATG CCTATGCTCG TTGTATCGAA
CGTCTTGGCG ATATTGGCGC AGGACAACTC ACTAAGATGG TCAATCAAAT CTGCATCGCA
GGTGTGGTTC AGGGGTTGGC TGAGGGGCTT CATTTTGCCC GCAGCGCCGG ACTCGATGGT
GAGAAGGTTG TCGAAGTGAT CAGTAAAGGG GCCGCACAAT CCTGGCAGAT GGAGAATCGC
TATCAGACGA TGTGGCAGGG AGAGTATAAT TTAGGTTTCG CCGTAGACTG GATGCGAAAA
GATCTGAATA TTGCATTAGA TGAAGCCAGA AAGAATGGCT CACATCTCCC CCTGACAGCT
TTGGTCGATC AGTTCTACTC TGAGGTGCAG GCCATCGGCG GTAATCGCTG GGATACGTCA
AGCCTGTTGG CAAAACTTGA GCGCAACAGA AAGTAA
|
|---|
| Protein sequence | MAKVAFIGLG VMGYPMAGHL VSNGHDVTVY NRTVGKAEAW VNEYDGQSKS SPELAAQGQD
FVFICVGNDD DLRDVTLGEA GVLKGMEAGA ILVDHTTASA DVAREIGEVA SQSGIGFLDA
PVSGGQAGAE NGVLTVMTGG DPEIFEQAKP IIDAYARCIE RLGDIGAGQL TKMVNQICIA
GVVQGLAEGL HFARSAGLDG EKVVEVISKG AAQSWQMENR YQTMWQGEYN LGFAVDWMRK
DLNIALDEAR KNGSHLPLTA LVDQFYSEVQ AIGGNRWDTS SLLAKLERNR K
|
|---|
| |