| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2618 |
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| Symbol | |
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| ID | 5610674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3171260 |
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| End bp | 3172150 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933537 |
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| Product | cytidine deaminase |
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| Protein accession | YP_001474353 |
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| Protein GI | 157375753 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0295] Cytidine deaminase |
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| TIGRFAM ID | [TIGR01355] cytidine deaminase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00439525 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000194898 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGATA GATTTATAAA GTGCATCGCA GAGTTGCCCA AACCACTATC AGATGCATTG
GTACCCATGT TGAATGCCGA GTTTGCCGGC CATATCGATG CCCAGCAACT TAGCACGCTT
ATCACCAAGA GTGGATTAGC AGAGAGCGAG CTTCTGATCG CTTTGCTTCC TGTTGCCGCG
GCACTGGCCA GACCGCCTAT CAGTGAGTTT TATGTCGGTG CCATTGCCAA AGGTAAGAGT
GGTGATATCT ACATGGGTGC AAATATGGAG CTCTCAGGTG AGGCACTATT CCATTCGGTG
CATGCAGAGC AGAGTGCCAT CAGTCATGCA TGGCTGAGCG GTGAACGTCA AATTGAAGAT
GTCATCGTTA ATTTCTCACC ATGTGGTCAT TGTCGCCAAT TTATGAACGA ACTGGTCGAA
GGTCAGAAGG TGAAAATCCA CCTTCCTGAG CAGCAAACTC AACCTCTGTC ACACTATCTG
CCCTATGCCT TTGGCCCGAG CGATCTGAAC ATCACTGAGC CCCTGCTAAC GAAACAGCAG
CATGAGCTTA GTCTGGACAG CTCAGATCCT ATGATCATCG AGGCTCTGGA TCATGCAAGC
TTAAGCTACG CCCCTTATAC CAATAGCTAT GCCGCTGTTG TCCTGGAGAC ACAAGATGGT
GCGACCTATT GTGGCCGATA TGCTGAAAAT GCGGCATTTA ACCCCTCTAT GTTACCCATG
CAGATGGCGC TTTCTACCAT GGCCAGACAT AACAGAGAGT TCTGTGAGAT CTCTCGTGCG
GTACTTATCG AGTCAGCGGG TGGAAAAATC TCTCTGGTTG GCGCGACGAT GGATGCCCTT
CACGCCGTTG CTGCGGTAGA GCTTGAACAT ATCGTCCTCG ACCCAGAGTA A
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| Protein sequence | MQDRFIKCIA ELPKPLSDAL VPMLNAEFAG HIDAQQLSTL ITKSGLAESE LLIALLPVAA
ALARPPISEF YVGAIAKGKS GDIYMGANME LSGEALFHSV HAEQSAISHA WLSGERQIED
VIVNFSPCGH CRQFMNELVE GQKVKIHLPE QQTQPLSHYL PYAFGPSDLN ITEPLLTKQQ
HELSLDSSDP MIIEALDHAS LSYAPYTNSY AAVVLETQDG ATYCGRYAEN AAFNPSMLPM
QMALSTMARH NREFCEISRA VLIESAGGKI SLVGATMDAL HAVAAVELEH IVLDPE
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