Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2599 |
Symbol | |
ID | 5610705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3150258 |
End bp | 3151763 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640933518 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001474334 |
Protein GI | 157375734 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000558383 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAAG TAAAATTCCG CTGGATAGAT CAATACCTTA TCCATATGAC CCTGAAAACC AAATTCGCTA TTTTAGCTAT CGTTCCTATC TTCACCCTGA TTGGTCTGGC ATTTATGCTT AACAGCCAAT TTGAATCGGA GCTGCTTGAT ACGCATAACA AGGCAAGCCT GAACCAGGCT CAAAGCATAA ATTCAGTGGT TGATATCAGC TATGACTTTA TTCCTGAGGC ACAACGTGCA GAATACCTGC AGAAAATTAA CCGGGTCGCC AATACTAAAA TCATAAGCAA GCTCGATGGC AAGAGTGAGC GCCTCGCGCA ACAGGGAGGC GGTAACCTTG AGATAAGTTC CGGTCTACAG TCGGTCAGTA AAGTCAGTAG CAACCAATTA GCCACGACCT TGACCGTCCC CCCTCTCGAT AGCCTCACCG ATAGCAACCA TTGGTTATCT ATTGTGATGT CCGTCGCGTT CATGGTTGTG ATCATCTTAA TCGCAGGTTA CTACATCTCG ACATTTGTCG GAGGCGCACT CTACACCAGT GTGATGGCCC TTAAGCGAGC CGCCGACGGC GATCTCACCA GTCGTCTCAA CTTTTTCGAA GTTAAGGACG AGTTCAGTTT ACTGGCTATC AGCATAGATA CACTGGTCGA AAGACAACAT ACCCTGGTCA AACAGATCAC ACAGGCCAGC ACACAGATCC GTCAAGTCGT GCAATCATTC AGACAAAATG CGCAGGAAGG TCAGTCATTG GCTGCAAATC AACGTCAGCA TCTGGACTCA CTCGCCACCG CGATGGAGGA GATGACAGCT GCCGTGATTG AGGTTGCCAG AAATGCCGAG CAGTCTTCGG CTGAGACTCA GGAAGCCAAT ACTCAGGTTG ATGCCGGCTC CAAAGACATC GAAACGACCG TTGTCGCTAT CGGCGGTTTA TCCAATGAGA TAGCCAATGC CTCAAGCGCC GTCCACGATC TCAATGAGAA TGCGGCCAAG ATCGATGAAG TGGTCACGAC CATTAACGCC ATTTCCGAGC AAACTAACCT GCTTGCACTC AATGCCGCCA TCGAGGCTGC CAGAGCCGGT GAGCAAGGAC GAGGCTTTGC CGTCGTTGCC GATGAGGTAA GAACCCTTGC GGGACGAACT CAGTCCGCGA CCGTCGAGAT CAAATCTATG ATTGAAGCGC TTCAATCCGG TGCTCAGAAC CTGACTCAGG TGATGAAGCG CACCGTAGAT AAGGCCGATG ATGGCAAAAA GCATGTACTG GACACGGGTG AGGATCTCAA GGCTATTGCA CACCATAGCT CTAAAGTGAT GGAGATGAGT GTACTCATTG CAACCTCTGC AGAGGAGCAG TCATCGGTTG CCAATGAAAT TGCCTCTAAC CTGATGGAGA TCCGCAATCA GTCACACAAT GTAGAGCAAT CGGCAAACGA ATCGGTTTCA GGTTGTGACG AGCTACATGC CACTGCCGAG CAGTTAGATG ATCTGCTTGT TGGCTTGAAG ATCTAG
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Protein sequence | MKEVKFRWID QYLIHMTLKT KFAILAIVPI FTLIGLAFML NSQFESELLD THNKASLNQA QSINSVVDIS YDFIPEAQRA EYLQKINRVA NTKIISKLDG KSERLAQQGG GNLEISSGLQ SVSKVSSNQL ATTLTVPPLD SLTDSNHWLS IVMSVAFMVV IILIAGYYIS TFVGGALYTS VMALKRAADG DLTSRLNFFE VKDEFSLLAI SIDTLVERQH TLVKQITQAS TQIRQVVQSF RQNAQEGQSL AANQRQHLDS LATAMEEMTA AVIEVARNAE QSSAETQEAN TQVDAGSKDI ETTVVAIGGL SNEIANASSA VHDLNENAAK IDEVVTTINA ISEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRTLAGRT QSATVEIKSM IEALQSGAQN LTQVMKRTVD KADDGKKHVL DTGEDLKAIA HHSSKVMEMS VLIATSAEEQ SSVANEIASN LMEIRNQSHN VEQSANESVS GCDELHATAE QLDDLLVGLK I
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