| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2534 |
|---|
| Symbol | |
|---|
| ID | 5610310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3078951 |
|---|
| End bp | 3079820 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640933453 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001474269 |
|---|
| Protein GI | 157375669 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.950966 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGGAA GCGCTGGCAG AGTCGGACGC GCCATCTATA TCAAGCTGAT GCAGCAACAC
CATGTGGTCG GCATCGACAC TGCGCCGTGT TCAACGGTCG ATTATGTAGG CGATATCCGT
GATATGGACC TATTAACGAA AGCGTTAGAT GGGGTCGATG TCATTGTCCA TGTGGCTGCG
CTACATGCCC CCCATGTCGG ATTGGTGCAG GATAGCGAAT TTGAATCTAT CAACGTTAAC
GCGACTGAGT TGCTGGCGTT AGAGGGGCTG AAACACGGGA TCAAGCATTT CATCTTTACC
AGCACCACCG CGCTCTATGG ACATGCTTCA ACGCCAACCG GCACTGCCGG ATGGGTCAAT
GAACAGGTAA AACCTCAGCC CAAAACGGTC TACCACAGAT CTAAGATAGC GGCGGAGCAG
CTACTGGAGA ATATCTCGAA TCTGTTTAAC CTACCGGTGA CTGTGCTGCA GATGTCCAGA
TGTTTCCCCG AACCTGCTGA CCTGATGGCC GTTTACCGGT TAAGTCGTGG CATCGACTTT
CGTGATGTTG CCAGTGCCCA CGCTTGCGCG ATAGATAAGC GCCTGCCTGG TTTCAGGCGC
TATATTATTT CCGGCCAGAC ACCATTTAAT CCATCATCTT GTGAACGCCT CTATCTCGAT
GCGCCGAGTA TGATAAGAGA GTTTGCTCCA ACTCTTGCTC AGGAGTTTGT AGGTCGTGGG
TGGCACCTGC CCAAATCACT CGACAGGGTG TACGATTCGA CCCTTGCCCA AACTGAGCTT
GTCTGGCAGC CTAAATATGG CTTCGAGGCC GTGCTGAATA TGCTCGATAG TGAACTGCCT
GAAGTGCTTC CTGTACGAGG TGTTCGTTAG
|
|---|
| Protein sequence | MTGSAGRVGR AIYIKLMQQH HVVGIDTAPC STVDYVGDIR DMDLLTKALD GVDVIVHVAA
LHAPHVGLVQ DSEFESINVN ATELLALEGL KHGIKHFIFT STTALYGHAS TPTGTAGWVN
EQVKPQPKTV YHRSKIAAEQ LLENISNLFN LPVTVLQMSR CFPEPADLMA VYRLSRGIDF
RDVASAHACA IDKRLPGFRR YIISGQTPFN PSSCERLYLD APSMIREFAP TLAQEFVGRG
WHLPKSLDRV YDSTLAQTEL VWQPKYGFEA VLNMLDSELP EVLPVRGVR
|
|---|
| |