| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2477 |
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| Symbol | |
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| ID | 5610476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3010772 |
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| End bp | 3013090 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933398 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474214 |
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| Protein GI | 157375614 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0495637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0162982 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGATA AAATGGTTAA TGGACTTGAA TCCTATCTAT TCAGGCATAG AGCATTTGTT
ATTCTTGTTT TTTTAGTCAC GACAGTGTTC TTAGGCTTAC AGGCAAGTAA TCTAAAAATG
GATGCTGCCT TTATTAAGAA TATTCCGCTC AACCATACTT ATATGCAGAC CTACCTCAAG
CATCAAAAAC AGTTTGGTGG GGCTAATAGT ATTATGGTTG CCGTTGAAGA CAGCAGTGGT
GATATCTTCA ACGAGCGATT CTTCGATGTG TTAAAGAATG TTCACGATCA GTTGTTCTTC
ATTCCAGGCG TCGACAGGGC TCAGGTTAAG TCTCTGTTTT CGCCATCGAC ACGTTTCACA
GAGGTGGTCG AAGATGGCTT TGCGGGCGGC CCGGTTATAC CGGCGGACTT CTCGACAACA
ACCGCCGGAC TCACCGTCGT ACGAAATAAT ATTGAAAAAG CAGGTATTGT AGGAAGACTC
ATCGCTGAAG ATTATTCGGC AGCCATGGTG ACGGCTCAAC TGATGGATTT TGACCCTCAA
ACGGGCGAGC CATTGGACAC TCTCGCATTT GCATCTCAGC TTGAAGAGGA GCTGCGAACT
CAATACGAAA ATGACGACAT AAAAATTCAC ATTATCGGTT TTGCCAAGAT GGCGGGTGAT
GTTGCCGATG GTGCCAAAGG GGTCGTGCTG TTTTTCCTGA TAGCGATCAT AGTGACCGCT
ATCATGGTCT ATCTGTTTTC AAAATCGCTG GTACTGACCT TTTTGCCACT CGCGTGTAGT
TTAATCGCCG TGATCTGGCA ATTGGGATTA CTGACCGTGG TTGGGTTTGG TTTAGACCCC
ATGTCAATTT TGATCCCCTT CCTTGTCTTT GCCATTGGCG TGAGTCACAG CGTACAGATG
ATCAATGCGG TCAGGCGCAG GGTGGCCGAT GGCAAGTCGA CTAAATCAGC AGCAGCCTCG
GCGTTCAGAA GTTTGTTGAT CCCCGGTGGT ATTGCGCTCT TGTCTGACAC TGTGGGTTTT
CTCACTTTGC TGGCGATTGA TATCGGAATT ATTCGGGAGT TGGCGATATC GGCTTCTTTA
GGCGTTGGTG TCATCATTCT CACCAACTTG ATTTTATTGC CCTTGGTTAT TTCATACACA
CAGGTTACTC CACCGAAAAG GTCTCACGAT CCTTCCAATG ATGGAATAAA CCATATCTGG
AGGAAGCTGT CTGCGTTTGC CACAACTAAA TATGCGATCT GGGTGTTGGT CATCACAACG
GGGCTTTACG CTCTGGGCGC CCAGCAAGCT AGCCTGATGA AAGTGGGTGA CCTGCAAGGC
GGCGCGCCTG CACTTCATTT TGATTCTCGC TACAATCAGG ATACTTTTTA TATCACTGAT
AAGTTTTCAA TAACTACCGA TGTCATGACC GTGATTGTAG AAGCTTTTCC TGAAGCCTGT
ACTTATCACT CAGTCTTGAC TGAAATTGAT GAGTTTGAAT GGTTGGTCCG TAACACGCCA
GGTGTTGAGG CGACAGCAAG CTTAGCCTCT GTTGCAAAGC GCGTTAATGC CGGTTTCAAC
GAAGGAAATC CTAAGTGGCA AGTGTTACCG CGTACTACAG CGAGCCTGGT ACAAGCGGTT
GGTCGAGTTC CGACCACATC GGGTTTGCTC AATGGTGATT GTTCTGTCAT GCCTGTTTAT
CTGTTTTTAA AAGATCATAA GGCAGAAACC ATTGAGTTGG TGATAGATAA AGTTAAGACT
CTGGCAGCTG AAATGGACTC GGAGAAATTG AAGTTTAAGC TGGCTTCAGG TCCCGTCGGT
GTCATGGCTG CAACGAATGA GGCGGTGGCA GAAGCACAGT TACCTATGAT GCTGTACGTG
TATGGTGCGG TCTTTATTCT CTGTTTAATC AGCTTTAGAT CGCTACGGGC TACCGTTGCT
GTCGTACTAC CGCTTTACGT TGTATCAACA TTAGCTCAGG CACTGATGAC GCAACTCGAT
ATCGGTCTGG CTGTTAGTAC TCTGCCTGTT ATTGCATTAG GGGTGGGTAT CGGTGTCGAT
TACGGCATCT ATATTCTTTC TACTATGGCA GTGAGGCTTA GGGACGGCAT GCCTGTTCAG
GAAGCCTACT ATGAGGCGTT GGTTGAAAGG GGAAGTGCGG TTATATTCAC CGGCCTTACT
CTAGCGATTG GCGTGAGTAC CTGGTTCTTC TCTGCACTTA AGTTTCAAAT GGATATGGGG
ATTCTTCTGA CATTTATGTT TTTAGTTAAT ATGTTGGGAG CCATAATTAT TTTGCCGGCA
ATTGGCGCCT TCTTTTGGCG AAAACCCAGA GTAGAATAG
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| Protein sequence | MLDKMVNGLE SYLFRHRAFV ILVFLVTTVF LGLQASNLKM DAAFIKNIPL NHTYMQTYLK
HQKQFGGANS IMVAVEDSSG DIFNERFFDV LKNVHDQLFF IPGVDRAQVK SLFSPSTRFT
EVVEDGFAGG PVIPADFSTT TAGLTVVRNN IEKAGIVGRL IAEDYSAAMV TAQLMDFDPQ
TGEPLDTLAF ASQLEEELRT QYENDDIKIH IIGFAKMAGD VADGAKGVVL FFLIAIIVTA
IMVYLFSKSL VLTFLPLACS LIAVIWQLGL LTVVGFGLDP MSILIPFLVF AIGVSHSVQM
INAVRRRVAD GKSTKSAAAS AFRSLLIPGG IALLSDTVGF LTLLAIDIGI IRELAISASL
GVGVIILTNL ILLPLVISYT QVTPPKRSHD PSNDGINHIW RKLSAFATTK YAIWVLVITT
GLYALGAQQA SLMKVGDLQG GAPALHFDSR YNQDTFYITD KFSITTDVMT VIVEAFPEAC
TYHSVLTEID EFEWLVRNTP GVEATASLAS VAKRVNAGFN EGNPKWQVLP RTTASLVQAV
GRVPTTSGLL NGDCSVMPVY LFLKDHKAET IELVIDKVKT LAAEMDSEKL KFKLASGPVG
VMAATNEAVA EAQLPMMLYV YGAVFILCLI SFRSLRATVA VVLPLYVVST LAQALMTQLD
IGLAVSTLPV IALGVGIGVD YGIYILSTMA VRLRDGMPVQ EAYYEALVER GSAVIFTGLT
LAIGVSTWFF SALKFQMDMG ILLTFMFLVN MLGAIIILPA IGAFFWRKPR VE
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