| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2470 |
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| Symbol | |
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| ID | 5610076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2996285 |
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| End bp | 2998147 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933386 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474207 |
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| Protein GI | 157375607 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000205608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00654791 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTTTA AACTGGATAA AACCCTTTCA TTAGTTGCCG TAGGCGTAAT TGGTGTTCTT
CAGGGCGCTC ATGCCGCGCC TGTCTATGAA ATTAAAAATA TCGAAGATTT CGATCTTAAC
GGCACGCTGG AAAGCACCCG TAACGGATAT GGTATGGCTG TCAATGCCGA TAACAAGTCT
GTCGGTGTTT CAAAGGGTAA GAAAAAACTC GATACTTCTG ATGAAGATGA TGATGGCGTA
ATCGATATCG AAGATGGTAT AGCCGATGCT GAGAAGATCA CCTATTCGAT CGATGAGCCG
ATTAAAGCAA ACAACTTCAC TTTCACCGCT GATGAGAATG GTGCATCGGG TGCCTGGATA
CCCACGTTTG ATAGCGTGAA TGGCACTACG CCGCCAAAAG ATACCGATCC TGATGTTCCT
GAGTCAATCA ACTCTGTCGA TGTTAATTAC TACGACATGA ATGACGCCGG AGTAAAAATT
GGCTCCATGA CATCCCCGGA GCAGAAAGTT GAATATACTG GGGAGACCGC CGATCAAGAT
TACTGGTATT ACCGGGAGTT TGAAGAGCGT GGGTTTGCTA AAACTGCCAG TGGTAGCGAG
ATACAACTAT TACCACCATT AACTGAATAC GTAAAAGACA GTGACACGGT TAATGTTGGT
GGCTATTCGG TGGCTACGGC CATTAATGCA ACAAGCCTTA TCACAGGTTA TGCAGGCTCC
GAGCTTTCTA AAACGGCAAA AGAGAAGTTA GACAGCTGTA TCTCCGGTGA TACATACCCG
ATAGATGTGT GTATTCAGGA TGAGCAATAT CCCGATACCA ATGGTTATAG CAGCATTCAG
TATCAAGTAC GTGCCTATGT GTGGCAGTTG GGTGCCGATG GCACCGTGAC AGAGCGTAAA
GAGCTACCAT TAGGTCTGTC TTCAACATCC GATACAGTGT TTACTGCGCA GGGACTGGGT
GTGAATGGCG AAGGTGTGAT TGCTGGGCGC TCGCACGTCT ATCGCAACGA TGATACAGAC
AAACTCGCAT ATGATTCTGC CTACTGGACT AAGAACGGTG ACGGCAACTA TGAGTATCAC
TGGATCCCGA TGATTGACGA TAGATTCAGT TCTATCGCCT ATGACATCAA TGACAGTGGC
ATACTGGTTG GTAGTTATCA GCAGTATCTT GAAGGTTATA TCAGAGATAA GTTTTTCTAT
TTCGATACCA ATAATCCAGA TAGTGAAATC GTCACACCTA ACGACTTTTA TAACACAACT
TCAGATCTAA GCAGTAAAGC TAAAGACATC AACAATAAAG GTCAGGTCGT CGGATTTATC
GAGACGACTC ATGATAAAGA GAAGCCGCGT CCGAAAGAGG GTTTCCTGTT TGACAAGTCT
ACCAGCGAGT TCAGCAACTT AAATAAGTTG CTGACCTGTG AATCGAAAGG GTTTGTTAAA
AACTCTGACG GTGACTGGGT GCGTAATAAG ATAGAAGTTC AAGACGGCAC CGGAGTGACA
CTGACCTATA GCAGTGACAT TAAGGTCGTT GAAGCTAACA GCATCAATGA AGAGGGTACT
ATTGTCGGCA CGGCCTTTAT TCGTAAGCCA CTGTATAAAT TTGACGACGA TGGCAACCTC
GTTATCGGTG AGAATGGTTT GCCTGTATTT GATGTCAATG GCTATGGCGA TCCGTTAACT
TCTTACCTGC CTCGCATGGT AGTTCTGCAG CCTAATGGTG GAGAAGCAGA TGAAGCATTC
GTCAACGCAA ATAACTGTGT CGATGATAAC GGCGACCCAG AGGATTATAA GCGTAAAGGG
GCTGCCAGTT TTGCGTGGTT GTTCGCCCTA CCACTGCTTT GGCTGCGTCG CAGATTTAAG
TAG
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| Protein sequence | MKFKLDKTLS LVAVGVIGVL QGAHAAPVYE IKNIEDFDLN GTLESTRNGY GMAVNADNKS
VGVSKGKKKL DTSDEDDDGV IDIEDGIADA EKITYSIDEP IKANNFTFTA DENGASGAWI
PTFDSVNGTT PPKDTDPDVP ESINSVDVNY YDMNDAGVKI GSMTSPEQKV EYTGETADQD
YWYYREFEER GFAKTASGSE IQLLPPLTEY VKDSDTVNVG GYSVATAINA TSLITGYAGS
ELSKTAKEKL DSCISGDTYP IDVCIQDEQY PDTNGYSSIQ YQVRAYVWQL GADGTVTERK
ELPLGLSSTS DTVFTAQGLG VNGEGVIAGR SHVYRNDDTD KLAYDSAYWT KNGDGNYEYH
WIPMIDDRFS SIAYDINDSG ILVGSYQQYL EGYIRDKFFY FDTNNPDSEI VTPNDFYNTT
SDLSSKAKDI NNKGQVVGFI ETTHDKEKPR PKEGFLFDKS TSEFSNLNKL LTCESKGFVK
NSDGDWVRNK IEVQDGTGVT LTYSSDIKVV EANSINEEGT IVGTAFIRKP LYKFDDDGNL
VIGENGLPVF DVNGYGDPLT SYLPRMVVLQ PNGGEADEAF VNANNCVDDN GDPEDYKRKG
AASFAWLFAL PLLWLRRRFK
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