Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2440 |
Symbol | |
ID | 5609909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2961643 |
End bp | 2963571 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933351 |
Product | hypothetical protein |
Protein accession | YP_001474177 |
Protein GI | 157375577 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00616758 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACACCT TAAAAACAGT CATGTTAGTC AGTACATTAT CCTTAATCGC CTGTGGTAGC TCAGATGATG GCGAGCCCAT GCCCACGTTT CCTCGTTGTG AACTGCAATC GCAGTTAACC AGCATAGAAA CGGGGTCTGA TTTAGAGTTT TTAGTTGAGG AGGATTACCA GGTTAATCAG TCGGCTGCCA TCATCGCAAG AATAAACAAC CAAGATAGCG ACGGTTTACA CTTCAGTTGG CAACAGTTAA CGGGACCGGC TCTTATTTTA AAATCGATAA AGAGCCAAGT CTTAGCGTTT CAGGCAACGA AGCCTGGGAG TTACACTTTC TCCGTTACCG TTAGCGGAGA TGAGTTGTTA TTAGAGAAAA ATATTGAATT AACGATTCAG GAAGGCCCGG TAAGCAGATT AAATGTTCGC TCGGATCACC AGGTAGTAGA GGGAAATAAC GTCAGCTTCA GAGTCGACAG AGTCGATGGT CAAATCCCAT CCGATTTAAG CTGGTGTATC GCCGCGGGCC CGGATCTTAA TCTCGATACC AGTAATATCG AAACCCCACA ATTCATTGCC CCAGAGGTTA ACACTGATAC GATAAGCCAG CTTAGAGCGA CGGCTACCAT TGGTGGAGTT CAAACATCTT CAGACGTCAT TGCTCTCATT ACCCATGAAC AAGTCATCAC CTCTGAGTAT TTTGATAAAC CGATAGCCAG AACCCATCCT TACAAAAGCG ATACTCCCTA TGCCGGTAAT CTGCAAAGCT GTGTTTATTC TAACCAGCTA ACCGCACCTT GTAGCATAGA GCAGCTGCCA TTGATAGGAC ATACACAAGC GCTACCGGAC AAGAATAAAA TTCTAGACCG ATTACTGGTT TCTCATCAGT GGATGGGGGA AAATTTTGAG GCTTTTCTGA ATGAAATGGA TCCGGCGACT GACTTTTCCA AGCTATTACA ATCAGTAACG GCAGTCGTGA TTAGTTACGA TATTCGTCCT TCTTTCTACT GGGCCTTAAC CGGCGCGATC TATCTGGATC CAAATGATCT TTGGCTACTT GCCCAGGAAC GTGACGTCAT TAATGAGGCC GCTGATTACC GAAGTCTATT CGGCAACGAG TTAAATTTTA TTATGCCTTG GCGCTATGTA AAAGATAACC AATATGTCTC CTACAGTGTA CCTAGAGAAA CCCGCACCCA TCGGACCATG GCTGAATTGT CCCCTGAGCT TTCGTCACTC CTTTATCATG AACTCGCCCA TGCAAATGAT TTCTTTCCGC GTTCAGTACA CGATAGCATC GAAGGTGGTA CCTTACTCGA CCACTACAAT AGAAGATCCC TTGCTGGTGA ATTAGTATCG GATAAGGTTA CAGCTCAATA TCCACTGTAC AGTGATGAAC TCACCTCTCT GGCGAATGTA AGCTTCCGTG GTCAGGCGGC TACTGCTATC CAAAAAGCCT ATCTACCTGC CGATATTACA CAATTCTTCT CAACAGACAG GGCAACAGGT TATTACGCTT ATTCAACCAA ACGTGAAGAT ACGGCGATGC TGTTTGAAGA GGCGATGATG AGCCATCGAT ATAGGATCTT ACGTGATGTC GGTATAACGG ATAAACCGGA TAGCCCTACC GCGAGTAACA TTCTTGTTGA TTGGGGCCAG AGAGGCCGAA TAGGAGAGGA TACGATTCAA GCCAGAGCAG CATTAGTGAT TAATGAAATA TTACCAGAAC TCGATGGTAA CACCTTAGTC GGGGCGCTTC CTGATCCGAT CCAGATGACT CAAGGGTTGT CCTGGTTAGA TAATTTAACG ATTTCACCGG TTCTGTCAAT CTCATCTGAC TCTGAGCACC TCTCAAAACA GGCTCCTATC AGTAATCACA CACAGAGAGT AATACCAGAA CTCAGAGTCA GTGGCGACAG GCATAAAATA GATAATTAG
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Protein sequence | MNTLKTVMLV STLSLIACGS SDDGEPMPTF PRCELQSQLT SIETGSDLEF LVEEDYQVNQ SAAIIARINN QDSDGLHFSW QQLTGPALIL KSIKSQVLAF QATKPGSYTF SVTVSGDELL LEKNIELTIQ EGPVSRLNVR SDHQVVEGNN VSFRVDRVDG QIPSDLSWCI AAGPDLNLDT SNIETPQFIA PEVNTDTISQ LRATATIGGV QTSSDVIALI THEQVITSEY FDKPIARTHP YKSDTPYAGN LQSCVYSNQL TAPCSIEQLP LIGHTQALPD KNKILDRLLV SHQWMGENFE AFLNEMDPAT DFSKLLQSVT AVVISYDIRP SFYWALTGAI YLDPNDLWLL AQERDVINEA ADYRSLFGNE LNFIMPWRYV KDNQYVSYSV PRETRTHRTM AELSPELSSL LYHELAHAND FFPRSVHDSI EGGTLLDHYN RRSLAGELVS DKVTAQYPLY SDELTSLANV SFRGQAATAI QKAYLPADIT QFFSTDRATG YYAYSTKRED TAMLFEEAMM SHRYRILRDV GITDKPDSPT ASNILVDWGQ RGRIGEDTIQ ARAALVINEI LPELDGNTLV GALPDPIQMT QGLSWLDNLT ISPVLSISSD SEHLSKQAPI SNHTQRVIPE LRVSGDRHKI DN
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