| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2433 |
|---|
| Symbol | |
|---|
| ID | 5614151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2955647 |
|---|
| End bp | 2956255 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933344 |
|---|
| Product | lysine exporter protein (LysE/YggA) |
|---|
| Protein accession | YP_001474170 |
|---|
| Protein GI | 157375570 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1279] Lysine efflux permease |
|---|
| TIGRFAM ID | [TIGR00948] L-lysine exporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.274749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000341611 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCAT TTATTCAGGG TGTAGGAATT GGCGGAAGCC TTATTATGGC GGTAGGCGCA
CAAAATGCGT TTGTACTTAA ACAGGGGCTT AAGCGTTCAC ATTCTTTACC CATAGCCGCA
TTATGTTCAT TGATCGATGC CTTGATGATA ACGGCTGGTG TCGCAGGCCT TGGGCACTTG
ATATTAGCCT TTCCTTTGAT TAAGGATATT GCCAGCATAG GCGGGGCCAT CTTCTTGTTG
GTTTATGGTG CGAAGGCATT AAAGTCTTCG TTTAATGAGC AGACGATTTC GGAAGGTGCA
ACTAAAGGGG CTGAAACACT TAAGGCTGCA GTACTGACGA CATTGGGTAT TAGCTTTCTC
AACCCTCATC TGTATCTGGA CACTGTAGTG TTGCTTGGTA GCATCAGTGC ACAGTTTGAA
GGAGTGGATC GCCCTCTATT TGGTGCCGGT GCCGTGCTGG CCTCGTTTGT GTGGTTTTTT
AGTTTAAGTT TTGGAGCGAG ATATTTAAGT CCGCTATTTC AAAACCCTAA AGCCTGGAGC
TATTTAGATA GATTTATCTG CATGACGATG TGGACCATTG CGGCGGTCTT GATCTGGCCT
TACTTATAA
|
|---|
| Protein sequence | MQAFIQGVGI GGSLIMAVGA QNAFVLKQGL KRSHSLPIAA LCSLIDALMI TAGVAGLGHL
ILAFPLIKDI ASIGGAIFLL VYGAKALKSS FNEQTISEGA TKGAETLKAA VLTTLGISFL
NPHLYLDTVV LLGSISAQFE GVDRPLFGAG AVLASFVWFF SLSFGARYLS PLFQNPKAWS
YLDRFICMTM WTIAAVLIWP YL
|
|---|
| |