| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2353 |
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| Symbol | |
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| ID | 5611365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2863595 |
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| End bp | 2865178 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933264 |
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| Product | isocitrate lyase |
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| Protein accession | YP_001474090 |
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| Protein GI | 157375490 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2224] Isocitrate lyase |
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| TIGRFAM ID | [TIGR01346] isocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000102131 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000217224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCAAATT ACAGAGCAGA TATCGATACA GCAACAACCT TGTTAGAGAA AGAAGGTAGC
GCCTGGAATG CAATCAACCC TGAATCAGTA GCCCGTATGC GAGCTCAGAA CCAATTTAAG
ACAGGTTTGG ACATTGCCAA GTATACCGCC AAAATAATGC GCGAAGACAT GGCTAACTAT
GATGCAGACA GCTCACAGTA CACTCAATCA CTGGGTTGCT GGCACGGGTT TATCGGCCAA
CAGAAGATGA TCGCGATTAA GAAGCATCTT TTAACGACTA AACGCCGTTA CCTGTACCTA
TCTGGCTGGA TGGTTGCAGC ACTGCGCAGC GAGTTCGGCC CACTGCCGGA TCAGTCTATG
CACGAAAAAA CGTCTGTCGC CAGCCTTATC GCCGAGTTAT ACACCTTCCT TCGTCAGGCC
GATGCCCGTG AATTAGGTGG ACTATTTCGC GAACTGGATA AAGCCGAAGG TGCAGATAAA
GCCGCTGTAC AAGACAAGAT TGATAACTTT GAAACTCATG TAGTACCGAT TATCGCCGAC
ATCGACGCCG GTTTTGGTAA TGAAGAAGCC ACCTACCTGA TGGCAAAACA GATGATTGAA
GCGGGTGCCT GTTGTATCCA GCTTGAAAAC CAGGTATCTG ATGTGAAACA GTGCGGACAC
CAGGACGGTA AAGTCACGGT GCCACATATT GAGTTTCTTG CCAAGATCAA TGCTGTACGT
TACGCATTCC TCGAGCTTGG CATCGACGAT GGTGTCATTG TTGCCCGTAC CGACTCATTG
GGTGCAGGTC TGACACAGAA GATTGCAGTA ACCACTGAAC CTGGCGATCT GGGCGACCAA
TACAACTCAT TCCTTGAAGT TGAAGAGGTA TCGACCGATA ACTTACTCAA TGGGGATGTA
GTATTTAAAC GCGGTGACAA ACTCGTTAAG CCATCACGCC TTCCAAACGG CCTGTTTAAG
TTCAGATCGG GTACGGGTGA AGAGCGTTGC GTTCTTGACT GTATCACCAG CCTGCAAAAC
GGTGCAGATC TATTGTGGAT TGAAACAGAG AAGCCTCACG TTGCCCAAAT TGGCGCTATG
GTAAACGCTA TCCGTGAAAC CGTACCGAAT GCCAAGCTTG TTTATAACAA CTCACCTTCG
TTTAACTGGA CGCTTAATTT CCGTCAGCAG ATCTTCGATG CGATGGCAGA AGCGGGTAAG
GATGTATCGG GTTACGATCG TGCTAAGTTA ATGAGCATCG ATTATGACGA AACAGAGCTT
GCGATAGAAG CCGATGAGAA GATCCGTACC TTCCAGGCTG ATGCGGCGCG TGAAGCGGGT
ATCTTCCACC ACCTGATCAC ACTACCGACA TACCATACTG CGGCCTTGTC TACAGATAAC
CTGGCTAAAG AGTACTTCGG TGACCAAGGT ATGCTGGGTT ATGTAGCCGG CGTACAGCGC
AAGGAGATCC GTCAGGGCAT CGCTTGTGTT AAACACCAGA ACATGGCGGG GTCAGATATG
GGTGATGATC ACAAAGGGTA CTTCTCCGGA GACCAGGCAC TGAAAGCATC CGGTAAAGAC
AACACAATGA ACCAATTTGG TTAA
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| Protein sequence | MSNYRADIDT ATTLLEKEGS AWNAINPESV ARMRAQNQFK TGLDIAKYTA KIMREDMANY
DADSSQYTQS LGCWHGFIGQ QKMIAIKKHL LTTKRRYLYL SGWMVAALRS EFGPLPDQSM
HEKTSVASLI AELYTFLRQA DARELGGLFR ELDKAEGADK AAVQDKIDNF ETHVVPIIAD
IDAGFGNEEA TYLMAKQMIE AGACCIQLEN QVSDVKQCGH QDGKVTVPHI EFLAKINAVR
YAFLELGIDD GVIVARTDSL GAGLTQKIAV TTEPGDLGDQ YNSFLEVEEV STDNLLNGDV
VFKRGDKLVK PSRLPNGLFK FRSGTGEERC VLDCITSLQN GADLLWIETE KPHVAQIGAM
VNAIRETVPN AKLVYNNSPS FNWTLNFRQQ IFDAMAEAGK DVSGYDRAKL MSIDYDETEL
AIEADEKIRT FQADAAREAG IFHHLITLPT YHTAALSTDN LAKEYFGDQG MLGYVAGVQR
KEIRQGIACV KHQNMAGSDM GDDHKGYFSG DQALKASGKD NTMNQFG
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