| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2350 |
|---|
| Symbol | |
|---|
| ID | 5611362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2859074 |
|---|
| End bp | 2859868 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933261 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474087 |
|---|
| Protein GI | 157375487 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000109829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000775471 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA AAATACAGGT TGAAGATGTG GATGTTTACG TTGAGGGTAT GGGTGATGAA
ACCATCGTGA TGGTTCACGG CTGGCCGGAT ACCTACCGGG TTTGGGATAA GCAAGTTGAA
GTTCTCAAAG ATAGATATCG TTGCGTTAGG TTTACCTTGC CCGGTTACGA CAAAAGCAAA
CCAAGACGTG CATATGATCT GAAAGAGATC GTGCAGCTGA TCAATACCAT TGTCGACACT
GTCGGCAATG GAAAGCCTGT GACATTGATG CTTCATGACT GGGGATGTTT CTTTGGTTAC
CAGTTCTACA TGAACTATCG TGAAAAAGTC ACTAGAATTA TTGGAGTGGA TATAGGTGAC
GCAGGCTCCA AAGAGCATGT GTTGTCGGCC AAGGTGAAAG CCTTTATGTT TGGTTACCAG
ATGTGGTTGG CTGCGGCATG GAAAATTGGT GGAAAATTAG GTGATGCCAT GACTCGTAAG
ATGGCAAAGC TGCTTCATGC TCCAGGAGAA CCCGGATCTA TCACCTCATC GATGACCTAT
TCCTATTATT GGAAGTGGAG TCATGTGTTA ACAGGACGAT CGCTGGATCA TCTTCCTCTG
GAGATCACCT GCCCATTGCT CTTCATGTAC GGTGAAAATA AACCCGGCAT GTTCCACTCA
ACACCTTGGG TAGAAAAGAT TGCCTCTGAT AAGCGAAATA GGGTGGAGCC ATTTCAAACA
AGACATTGGG TAATGATTGA GGCCCCAGAA CGGTTCAACA ACATCATGTT AGATTGGCTG
GGGAAGAAAG ATTAG
|
|---|
| Protein sequence | MTEKIQVEDV DVYVEGMGDE TIVMVHGWPD TYRVWDKQVE VLKDRYRCVR FTLPGYDKSK
PRRAYDLKEI VQLINTIVDT VGNGKPVTLM LHDWGCFFGY QFYMNYREKV TRIIGVDIGD
AGSKEHVLSA KVKAFMFGYQ MWLAAAWKIG GKLGDAMTRK MAKLLHAPGE PGSITSSMTY
SYYWKWSHVL TGRSLDHLPL EITCPLLFMY GENKPGMFHS TPWVEKIASD KRNRVEPFQT
RHWVMIEAPE RFNNIMLDWL GKKD
|
|---|
| |