| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2330 |
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| Symbol | |
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| ID | 5611259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2828478 |
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| End bp | 2829521 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933241 |
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| Product | succinylglutamate desuccinylase |
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| Protein accession | YP_001474067 |
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| Protein GI | 157375467 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2988] Succinylglutamate desuccinylase |
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| TIGRFAM ID | [TIGR03242] succinylglutamate desuccinylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00127772 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTTCAAG CGCTAAAAGA GTCGAAGGAC TTTTTAAATC TCACCCTTGC TCATCCTCAA
CATATCGATG AAACCTGTTC ATTTTCGGTA GGTGACCATA CTCAAGTAGA AGTATGGGAT
ACCGGTGTTA TCGTATTTGA ACCTAAAGTT AATCAAGCCA AAGATATTGT CCTCTCCTGT
GCCGTACACG GGAATGAGAC TGCACCGATA GAATTGTGCA ACGAGCTGGT TACAGCGCTG
CTTGAAGAGA AACTTATCGC TAAACAAAGG GTGCTTTTTT TGTTTGGTAA CCCAGCGGCT
ATTATCAATG GAACCCGTTT TATCGATGAA AACTTAAATC GACTATTTAA TGGGGCACAT
TCATCCGGTG AAGGTCTGGT TAACCCGGAA AGGATCCGAG CCAAGAAACT TGAATTTTAT
GTCGACAAGT TTTTTGCAGG TCAGAGAGAA GAGCGTCATC GTATTCATTA TGATCTTCAC
ACGGCCATTC GCGGCTCAAA GCATGAAAAA TTTGCTATCT ACCCTTATCG TCCGGGAAGA
AAGTTTAGTG GTGAGCAGAT CATGTTTCTT GAGGCATGCG GTATCGATAC CGTCCTTTTT
CATCATGAAC CTACGACCAC CTTCAGCTAT TTCTCATCTC TGAATTATCA GGCCGATGCA
TTTACCATCG AACTGGGGAA AGTCTTGCCC ATGGGGCAAA ATGACATGAC TCGCTTCATT
GCGCTGAAGG AGATGTTAAA CAGACTGATA GGCAATGATC CACTCGAGTT GTCCGCTTTC
GATGTAAACA AGGTCAATCT TTATCAAGTC TGCCGTGCTA TTAACAAAGA GTTTGATGAT
TTCGAATTCA CCTTCACCAA TGATGTCGAA AATTTTACAT CCTTTCCAGA AGGTTACATC
CTGGCGAAAG AGGGCGGCAA CAATATCAAG GTTGAACATA AAGTTGAGGC GATTGTCTTT
CCTAATGCCA AAGTACCCGT GGGGCAGAGA ACCGTGCTTT GCTTAAAGCC TGCAACGACA
GAGAATATCG ATTTAGGTAA CTAA
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| Protein sequence | MFQALKESKD FLNLTLAHPQ HIDETCSFSV GDHTQVEVWD TGVIVFEPKV NQAKDIVLSC
AVHGNETAPI ELCNELVTAL LEEKLIAKQR VLFLFGNPAA IINGTRFIDE NLNRLFNGAH
SSGEGLVNPE RIRAKKLEFY VDKFFAGQRE ERHRIHYDLH TAIRGSKHEK FAIYPYRPGR
KFSGEQIMFL EACGIDTVLF HHEPTTTFSY FSSLNYQADA FTIELGKVLP MGQNDMTRFI
ALKEMLNRLI GNDPLELSAF DVNKVNLYQV CRAINKEFDD FEFTFTNDVE NFTSFPEGYI
LAKEGGNNIK VEHKVEAIVF PNAKVPVGQR TVLCLKPATT ENIDLGN
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