| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2309 |
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| Symbol | |
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| ID | 5612068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2797887 |
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| End bp | 2799530 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933219 |
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| Product | methyl-accepting chemotaxis protein-like protein |
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| Protein accession | YP_001474046 |
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| Protein GI | 157375446 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.037772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000415162 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAATACTG AAAAGAAAAA TTACGGTTCC ATCAAACATC TACTGATCGC TACTTTCTCT
GCACTGGTCA TCATATTCTG CATTGGTTTG ACCCTGATCG GCTACAACAT AGAAAATGTT
CGCACACAGA TAGATTCACT GGAGCGGGAA TATATCTCCA GCAATCTAGC GGCTCAGTTA
CTCCAATCAA GCTCGGGGCT AAGAAGAGAG CAGATCGGAT ACAGTCTAAG ACGCGTATTA
GGCACTAAGA TGAGTTCAGA CTCGGTTAAA TATATCGAGC GTGAAGCCGT CACACTCAAT
CAGACCTTCA CCAAGTTAAA GAAACTGGCC AATGTCCGGA CACAGGAACA ACTTGCACAA
TTAGAACAAC CCATTGCGGA ATTTAAGCTA CTTCATGAGC AATTCTTAAC CATGGATAGT
AACGCGAAAC CAAGAGAGAC GGCGAAGATG TTAACCTCAA CCGCCTCCTG GAAGATCTAT
GACAGGATAG AAACCGAGAT ACGGGCACTC ACTCAACAAC AGGCTGAGAT AGTCAATGGC
GCCAAACAGT CAAGTAGCCA TGCCATAAAT AATTTAAAGA GCAGTCTTAT CGCTATCGCT
GTAATTTTCA TCATGACGAT TGTCTTTGCG GGCATCATTC TCGTACGCCG CATCCTTGCT
CCACTGCAAG CAACCACAGA AGTGCTAACT GAGATCTCAG CTGGAAACTT GGCCGTTGAC
ATTGAACGGG CAAGATTTAA CAGCGCCGAA TACAGCGCGT TAGCCGATGT GCTTACCTCC
ACCCGAATGA AGCTTCAACA GATGATCACC CAAATTGGCA CCTCATCTGT GCAATTGGGA
AGTGCCGTGG AAGATCTTGG CTGCGTTGCA AGTGATTCCG CCACAGGTAT GGAGCAGCAA
CGCAATGAAG TCACTCAGGT TGCCACAGCA ATGAACGAGT TACAGTCATC GATCGTCGAG
ATCTCACGTA ACACAAGCCA AACGGCAGAA TTTGCTAACA ATGCGGTTCA AGCAACCACA
CAGGGACAGA GCGTAGTCTC CTCTACACTT CTGGCCATCG ATGAGTCAGC AATGGAGATC
GACAAGGTCA ACACCGTCAT CGAGCAATTA CAGAAAGACA CTGATGCGAT AGCCGTTATT
TTGGATGTGA TAGCCAATAT TACCGAACAG ACAAACCTAC TCGCCCTCAA TGCCGCCATT
GAAGCTGCAC GGGCCGGAGA GCAGGGACGC GGCTTTGCAG TAGTGGCGGA TGAAGTCCGC
GTACTGGCAC AGCGTACACA AACATCGGCA CGGGAAATTA AAGACACCAT AGAAGTATTA
CAGGAGCGAG CAAAGCAGGC AGTTGAATCG ATGAAATCGA GTCAAAGTAA GATGCAAACC
AGCGTGGTAG CGGCAGATCA GGCTCACCTT GCCATGGAAG AGATCAGCAA TGCTATCGGC
AGTATCAATG ATATTGCCAT TCAGGTGGCC AGCGCCACAG AACAACAAAC CGCCGTTACC
GAAGAGTTAA GTTGCAATAT CACCAATATC AGCGACGCAA GTCAGCGCGT ATCAGATGGA
TCGCATCTTG TCTCCCAATC GAGCCGGGAG CTAAGGCAAC TTTCTGTCAA TCTCGACGGA
ATGATCCAGC AGTTCAAGGT GTAA
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| Protein sequence | MNTEKKNYGS IKHLLIATFS ALVIIFCIGL TLIGYNIENV RTQIDSLERE YISSNLAAQL
LQSSSGLRRE QIGYSLRRVL GTKMSSDSVK YIEREAVTLN QTFTKLKKLA NVRTQEQLAQ
LEQPIAEFKL LHEQFLTMDS NAKPRETAKM LTSTASWKIY DRIETEIRAL TQQQAEIVNG
AKQSSSHAIN NLKSSLIAIA VIFIMTIVFA GIILVRRILA PLQATTEVLT EISAGNLAVD
IERARFNSAE YSALADVLTS TRMKLQQMIT QIGTSSVQLG SAVEDLGCVA SDSATGMEQQ
RNEVTQVATA MNELQSSIVE ISRNTSQTAE FANNAVQATT QGQSVVSSTL LAIDESAMEI
DKVNTVIEQL QKDTDAIAVI LDVIANITEQ TNLLALNAAI EAARAGEQGR GFAVVADEVR
VLAQRTQTSA REIKDTIEVL QERAKQAVES MKSSQSKMQT SVVAADQAHL AMEEISNAIG
SINDIAIQVA SATEQQTAVT EELSCNITNI SDASQRVSDG SHLVSQSSRE LRQLSVNLDG
MIQQFKV
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