| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2301 |
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| Symbol | |
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| ID | 5611113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2786298 |
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| End bp | 2787503 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933211 |
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| Product | aromatic amino acid aminotransferase |
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| Protein accession | YP_001474038 |
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| Protein GI | 157375438 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.359356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000291416 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCGATA AACTAACCGC TATGCCTTCC GACCCTATCT TAGGACTTAT GACTAAGTAT
CGTGAAGATA CACACACGAA CAAGGTCGAC CTTGGGGTCG GTGTTTATAA AGATGAAGCG
GGTCATACCC CTATTTTGAC TTGTGTTAAA AAGGCAGAGC AACATCGAAT AGACACCGAG
GAAACAAAAG TTTACATCGG ACCTACCGGT TCTGCCGGTT TCAATCAACT TCTGGGTGAG
CTGGCGTTTG GTATCGATAA TCCCGCGATT TTGGCTAACC GTGTTCGTAC CGTTTCGACT
CCCGGCGGAA CTGGGGCACT GCGTGTAGCA GCAGATTTCA TCAAACGAGC CAGTTCGGTG
ACGAAAAGTG GCGAGGCGGT GATTTGGGTC AGCGACCCAA CCTGGGCTAA TCATACCGGC
TTGTTCGAAG CGGCGGGGAT CACCGTTAAA ACCTACCCTT ACTACGACTA TGATACCAAG
ACCCTAAAAT TTAATGAGAT GAAAGCCGCG CTTGCAAACG TGGGACCCGA TGATGTCGTA
CTCTTGCATG CTTGCTGTCA TAACCCAAGT GGCATGGATC TGAACCAAAG CCAATGGGAC
GAAATCATCG AACTGACAAA AGAACAAGGC TTCACTCCGC TCATAGATAT GGCTTATCAG
GGATTTGGTG ATGGCGTGGA TGAAGATGCC TATGGTGTGA GAAAGATGGC CGCCGCAGTC
GATAACATGA TCTTATGTAG CTCTTGCTCT AAGAACTTTG GTCTGTATCG TGAGCGTATC
GGTGCCTGCT CCATCGTAGG CAAAGATGCA TCATCGGCTA ATGTGGCCTT TTCTGTTTTA
CTCTACGTTG TACGTTGCAT CTACTCTATG CCGCCAGCCC ATGGCGCTGC CATTGTTGAA
ACCGTTCTGG GCTCTGATGA GCTTAAACAA GAGTGGCTAG CCGAGCTTAA AGTCATGCGC
GACCGTATTA ACGGCAATCG CTCAATGTTG GTAGAAAAGC TAAAAGAAAA GGGTGTCAAA
CGTAACTTTG ACTTTATCGC CGAGCAAAAA GGGATGTTCT CCTTCCTTGG TATCAATCCA
AAGCAGGTTG AACAGCTTCA GCAAGAGCAC AGTATCTATA TGGTAGATTC AAGCCGGATC
AGTATCGCAG GTATCGGACA TGGAAATGTT GATTACTTAG CGGAGTCGAT AGCTAAGGTG
ATTTAA
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| Protein sequence | MFDKLTAMPS DPILGLMTKY REDTHTNKVD LGVGVYKDEA GHTPILTCVK KAEQHRIDTE
ETKVYIGPTG SAGFNQLLGE LAFGIDNPAI LANRVRTVST PGGTGALRVA ADFIKRASSV
TKSGEAVIWV SDPTWANHTG LFEAAGITVK TYPYYDYDTK TLKFNEMKAA LANVGPDDVV
LLHACCHNPS GMDLNQSQWD EIIELTKEQG FTPLIDMAYQ GFGDGVDEDA YGVRKMAAAV
DNMILCSSCS KNFGLYRERI GACSIVGKDA SSANVAFSVL LYVVRCIYSM PPAHGAAIVE
TVLGSDELKQ EWLAELKVMR DRINGNRSML VEKLKEKGVK RNFDFIAEQK GMFSFLGINP
KQVEQLQQEH SIYMVDSSRI SIAGIGHGNV DYLAESIAKV I
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