| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2239 |
|---|
| Symbol | |
|---|
| ID | 5612223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2699729 |
|---|
| End bp | 2700424 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933149 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001473976 |
|---|
| Protein GI | 157375376 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC ATCTTTTGAT CACAGGTGCT AATCGTGGCA TTGGTTTAAC TATGGTTCAA
CATTATCTCG CCGATGGCTG GCTTGTGACT GCCTGTTGCA GAGAGCCTGA AGAAGCGAAA
GAGCTACAGT CGTTATTGGA GGCAAATGAA GGCCTCTCGA TTTTTCAACT CGATGTCACC
GATTATGAAG GGGTAGATGA ACTAGCCGAA AACCTTGCCG GAGAGCCAAT CGATCTGCTT
ATTAACAATG CTGGCTATTA CGGCCCTAAG GGCAGTGGTT TTGGCGGTAC TGACGTTGAA
GAGTGGCGAC AAGTTATGGA GATTAATACC ATTGCACCAC TGAAAATCGC CGAAGCCTTT
TGTGCAAATT TAGCGCTCGC CGAGCACGGG ATCTATGCTG CCATTTCATC GAAGATGGGC
AGTATGGGTG ATAATTCGAG TGGCGGTTCA TACATTTATC GCTCGTCGAA GGCTGCGCTA
AATTCGGTAG TAAAGAGTTT GTCTATCGAC CTGCAACCCG AGGGGACAAG CGTGGTCGCT
ATCCACCCTG GATGGGTTCA AACTGCCATG GGTGGACCCA ACGCGTTGAT CACAACAGGT
GAATCTGTAA CAGGAATAAA GCGACTCCTT GATGGTTTCT CGACAGAACA CAATGGTGGT
TTTTATGACT TTAACGGTAA TGAGATAGCT TGGTAA
|
|---|
| Protein sequence | MAKHLLITGA NRGIGLTMVQ HYLADGWLVT ACCREPEEAK ELQSLLEANE GLSIFQLDVT
DYEGVDELAE NLAGEPIDLL INNAGYYGPK GSGFGGTDVE EWRQVMEINT IAPLKIAEAF
CANLALAEHG IYAAISSKMG SMGDNSSGGS YIYRSSKAAL NSVVKSLSID LQPEGTSVVA
IHPGWVQTAM GGPNALITTG ESVTGIKRLL DGFSTEHNGG FYDFNGNEIA W
|
|---|
| |