| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2234 |
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| Symbol | |
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| ID | 5612389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2693425 |
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| End bp | 2694558 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933144 |
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| Product | spermidine/putrescine-binding periplasmic protein-like protein |
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| Protein accession | YP_001473971 |
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| Protein GI | 157375371 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTTAA AACTTAGCGC TTGGTGGCCT ATCTTTATTG TGGCATTGCT CTTTTCCATG
TCGTGTTATT CAGCGAATCA AACAGAGGAT GTTGAAGTTA AGCAACCACT AAGGGTGTTG
ACCTGGGAGG GATATGTTAC AGCTGAAGAT ATCCGTGAAG TTAATTTAAT ACTCGCCAAA
CGAGGCTATA ACTATGAAGT TGAACTGGTC ACGCCTTTTG CACAGAGTGC CGATCAGATG
TTCGATCTTA TTCGAGCAAG AAAATGCGAC ATAACATTTC TGACCCTCTA TTTTATTAAG
ATGCAGAAAG AGCAGACGTC CAAATTGTTA CAAGCCATCA ATACTCAGTC ACCCAGACTG
TCCAATTTCC CGGATCTTCA CGCGAAACTC ACTCGACTGG ACATTGGAAT CAATGCCAAC
GGTGAGCCCT TGTACATTCC ATGGGGTGGT GGAATTTACG GGTTTTATAT TAATACGGAC
AAAGTTAAGC GGTCAGATAT CCCGACATCA GTATCCGATT TGTGGCTGGA TGAATGGAAA
AACACCTTCT CGTTAAATAT CGCTCAGGAG TGGTACAACC TTGGGTTGGC ATTGATGAGC
ATGGGGCATT CACCATTTTA TCTTTATGAA TCCCTGAAAT CACACGATCG ACAGACTGTA
CTTAAGATGT CATCGCCAGA CGGAGAGTTG CAGTACAAAA TAGCCAAGCT TTACCTGGCT
GCAAAAAGCT TCTGGTTAAA CTCATCTGGT TTCAACGATG AACTGTTAAT CGTCAGTAGC
TGGGGACCGG AGGTACATTC TCAAAATGTT AAGGGAGATA ATTGGCAATT GATTGACTTC
AAAGAGGGTC ATATGGCCTG GTTAGACACC ATCAATTTCG TAAAAGGTGT GAACGGTAAA
AAATTGGAAG CCGCTGAAAT CTTCGCAAAT TATTTCATTG GGAAAGAGGT TCAAACCCGT
ATATCCAGTG AACTGTCGAT GATCCCAGCC TCGAAGAAAG TTGCTGCCAA CCCCATGCTG
GGAGATGTGG ATAACATAGT GAAAAAAATT TGGATCGTCC CCCCCTTTGA TAATTCAAGT
TACGATATCA TGAAAAAAAT GACCGACAGA GCCAAGGTCA GTACAGGGCA CTAG
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| Protein sequence | MRLKLSAWWP IFIVALLFSM SCYSANQTED VEVKQPLRVL TWEGYVTAED IREVNLILAK
RGYNYEVELV TPFAQSADQM FDLIRARKCD ITFLTLYFIK MQKEQTSKLL QAINTQSPRL
SNFPDLHAKL TRLDIGINAN GEPLYIPWGG GIYGFYINTD KVKRSDIPTS VSDLWLDEWK
NTFSLNIAQE WYNLGLALMS MGHSPFYLYE SLKSHDRQTV LKMSSPDGEL QYKIAKLYLA
AKSFWLNSSG FNDELLIVSS WGPEVHSQNV KGDNWQLIDF KEGHMAWLDT INFVKGVNGK
KLEAAEIFAN YFIGKEVQTR ISSELSMIPA SKKVAANPML GDVDNIVKKI WIVPPFDNSS
YDIMKKMTDR AKVSTGH
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