| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2228 |
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| Symbol | |
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| ID | 5612591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2688299 |
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| End bp | 2689309 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933138 |
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| Product | glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) |
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| Protein accession | YP_001473965 |
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| Protein GI | 157375365 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
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| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.134296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTATCC GCGTTGCTAT TAACGGCTAT GGCCGTATTG GACGAAATGT TTTACGTGCA
CTTTATGAAA GTGAAAAAGA TTACCCGATC GAGATTGTTG CTATCAACGA TCTTGGTGAT
GCCTCTATCA ATGCTCATTT AACTAAGTAT GACTCTGTTC ATGGTCGTTT CAACGCAAAG
GTTGAACATG ATGACGAAGC TATTTATGTT AATCAAGATA AAATTCTGAC CTTCTCTCAA
CGTGATCCAT CAAAACTGCC TTGGGCTGAG TTGAAAGTTG ATGTCGTTTT CGAATGTACT
GGTATGTTCA CATCTAAAGA AGCTGTTCAG CCTCACTTAG ATGCAGGAGC TAAGAAAGTT
CTTATCTCTG CTCCTGGTAA GAATGTTGAT GCAACTGTCG TTTACGGTGT AAACAACAAT
GAAATCACAG CTGATATGAC GGTTGTGTCT AATGCTTCTT GTACGACTAA CTGTTTGGCA
CCTGTTGCTA AACCGTTAAA CGATGCAATT GGTATTGAAT CAGGTCTGAT GACCACTATC
CACGCTTATA CGAATGATCA ACGTCTTTCA GACGTTTATC ACACCGACTT ACGTCGCGCT
CGTGCAGCTG CAATGTCAAT GATCCCAACT CAAACTGGTG CCGCTGCAGC AGTCGGACTT
GTGGTACCAG AACTTGCTGG TAAGTTTGAT GGTCTGGCGG TACGTGTACC TACAGTAAAC
GTTTCACTTG TCGATCTATC ATTTATTGCA TCTCGCGATA CTACAGTCGA AGAAGTTAAC
GCGATAATCG AAAAAGCTGC TTCAGCTGCG CCAATGAGCG AAGTGTTAGC GGTTAATAAA
GAGCCATTGG TTTCTATCGA TTTTAACCAC AACCCGTTCT CATCAAACTT TGATGCAACT
CAGACTCGTG TTAAAGGTCG CTTAGTTAAA GTGATGTCTT GGTATGATAA CGAGTGGGGT
TTCAGTAACC GTATGCTAGA TAATGCTGTA GCCTTGATGA CTGCGAAATA A
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| Protein sequence | MSIRVAINGY GRIGRNVLRA LYESEKDYPI EIVAINDLGD ASINAHLTKY DSVHGRFNAK
VEHDDEAIYV NQDKILTFSQ RDPSKLPWAE LKVDVVFECT GMFTSKEAVQ PHLDAGAKKV
LISAPGKNVD ATVVYGVNNN EITADMTVVS NASCTTNCLA PVAKPLNDAI GIESGLMTTI
HAYTNDQRLS DVYHTDLRRA RAAAMSMIPT QTGAAAAVGL VVPELAGKFD GLAVRVPTVN
VSLVDLSFIA SRDTTVEEVN AIIEKAASAA PMSEVLAVNK EPLVSIDFNH NPFSSNFDAT
QTRVKGRLVK VMSWYDNEWG FSNRMLDNAV ALMTAK
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