| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2144 |
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| Symbol | |
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| ID | 5610533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2594437 |
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| End bp | 2595198 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933048 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473881 |
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| Protein GI | 157375281 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.389277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0100675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAATA TTTACAATAA ACCTTGTGAC ATCGACCGCG AACATGTTCG CCTTGCCAGT
GAATTTTTAG CCGAACAAGG GGTGAGTGAA TTCTTCTATG GTATAACAAC CAAGTCATTA
ATGCCTGCGA CCAATGAATT TAAAAAACTA CGCCGACGGA TGCCAAATGA GATGCTTAAG
GCAAGATATG GCATCAGTTC CAGTGACAAT ATACGGATGT ACCGTCACCG CTATCTGCAA
CATTTTGCCG CCGGTGATGA AGCCTACTTC GACAAAAACC TTCCCGGACT GAATATTTGG
CGTGACCCAG ACTATAGCGG TGGTAAAGGC GAGCAGTTTA AGCGCCTGAT GGATGAGTAT
GGCATCGTCA GTCGTGCTCT ATGGCTGTTG CCCATCAAAT ACAACCCTGA CTGGTATGCT
GTGTTTGTTA TGTTTTCTCC ACTGGACAGA AAAACACTCA GCCAGAAACT CAACGCTAAT
AGTGAACAAA TTGACTACCA ACTAAAACTC TACTCCAGCC TGTTCAATGA ACAGTGTATC
GCTCAGCTCA ATCCCATCAC TAACTTTAAC TGCCTCTCTG CCAAGGCTCT ACAGGTGCTG
GAACTTACCG CACAGGGATA CTCATGCGAG GAGATAGGCG AAACTCTGGT GATGACAGAG
AGCGGTGTTC ACTATCACCA GAACCGTCTC AAAGATTTGT TTAATGCCAA AAATCGGGCC
CAACTGGTGA GCTTTGCTCA CTCATTAGGC GTCTTAGATT GA
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| Protein sequence | MTNIYNKPCD IDREHVRLAS EFLAEQGVSE FFYGITTKSL MPATNEFKKL RRRMPNEMLK
ARYGISSSDN IRMYRHRYLQ HFAAGDEAYF DKNLPGLNIW RDPDYSGGKG EQFKRLMDEY
GIVSRALWLL PIKYNPDWYA VFVMFSPLDR KTLSQKLNAN SEQIDYQLKL YSSLFNEQCI
AQLNPITNFN CLSAKALQVL ELTAQGYSCE EIGETLVMTE SGVHYHQNRL KDLFNAKNRA
QLVSFAHSLG VLD
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