| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2110 |
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| Symbol | |
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| ID | 5611809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2553316 |
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| End bp | 2553978 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933007 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001473847 |
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| Protein GI | 157375247 |
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| COG category | [K] Transcription |
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| COG ID | [COG1802] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.123928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCTTTT TCAACGAGCA GCCTGTTACA GCGGCAGATA AAACATTTTT TCAAATGCGA
AAAGATATTG TTGAGGGGGA GATCGCTTCC GGATCTAAGC TTAGTGAAAC TGAGTTGTCG
ACAAAATATG CCGTGAGCCG TGCCGTCGTT CGCGAAGCCA TCAATCGTCT CGAGTCCTGT
AATCTGGTCG AGCGTAAGGC AAATGTCGGC GCCAGAGTGG TCACCTTAAC ACCGGAAGGC
TTAGTCGAGC TCTATCAGGT TAGAGAGTCT TTAGAGGGGA TGGCTGCGAG GTTAGCTGCA
AAAAATATGA CCGATCAGGA TATTGGCGAT CTGAATGTGC TATTAAATAC CCATTTTCAA
AAGGTCAAAA CCGGCGAGTC CTATTACCAG GAAGCCGGTG ATGTCGATTT TCATTATCGA
ATCATTCTCG GCAGTAAGAA TAAGCACCTT ATATCCATGT TAATAGACGG CATTTATCAC
CTGGTTCGTA TGTACCGGGT CCAGCTTGGA ATGACGGGCC CCAGGATCAC TACAGCATTT
GATGAACATA AGCACATAGT CCAAGCCATA TCCAATCGGG ATGAAGAGCT GGCAGAGATG
CTGATGCGTC GTCACATCTT GTATTCGAAA AATAATGTCG AAAAGAAATT AGCAAGCAAT
TAA
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| Protein sequence | MTFFNEQPVT AADKTFFQMR KDIVEGEIAS GSKLSETELS TKYAVSRAVV REAINRLESC
NLVERKANVG ARVVTLTPEG LVELYQVRES LEGMAARLAA KNMTDQDIGD LNVLLNTHFQ
KVKTGESYYQ EAGDVDFHYR IILGSKNKHL ISMLIDGIYH LVRMYRVQLG MTGPRITTAF
DEHKHIVQAI SNRDEELAEM LMRRHILYSK NNVEKKLASN
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