| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2047 |
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| Symbol | |
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| ID | 5609978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2481323 |
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| End bp | 2481838 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932940 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001473784 |
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| Protein GI | 157375184 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.285623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.248889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACTG ACTCATTACT GGCATTTCGC CGTAGTGCGA TCACTAATGG TGAATATTGG
CGACTCTTCA CCGGCAACCT ACTGCATACT AATCAATGGC ACCTGCTGAT GAACCTGGCT
GGCCTTTGGG TGCTCCTGTT ACTCTTTAAA CCTCATTTTA AAGCGCTTAC TTTCACCTTG
ATATTTTCGG CATTATGCTT ACTTCAAGGC CTTGGGTTAT ATCTCTTCTA TCCGGGCCTG
CTGGGCTATG TCGGTTTGAG TGGGATGTTA CATGGCCTGT TTACTTACGG GGCGATAAGA
GATATCTCAA CGGGGCTTAA GTCGGGTTAC TTGCTGCTGT TAGGAGTCAT TATCAAGGTC
GCCTATGAGC AGATATTTGG TGCGAGCGAG CAGGTAACAG AGATGATTGG TGCCCGGGTC
GCCACCGAGG CTCACTTAAT CGGCGTCATC ACAGGCATTT TGGTCGTGGC TTTGGTCAGT
TTTACCACCA AGCTGAAACC TAAAGTCAAT ATCTGA
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| Protein sequence | METDSLLAFR RSAITNGEYW RLFTGNLLHT NQWHLLMNLA GLWVLLLLFK PHFKALTFTL
IFSALCLLQG LGLYLFYPGL LGYVGLSGML HGLFTYGAIR DISTGLKSGY LLLLGVIIKV
AYEQIFGASE QVTEMIGARV ATEAHLIGVI TGILVVALVS FTTKLKPKVN I
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