Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2029 |
Symbol | |
ID | 5613970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2454584 |
End bp | 2457382 |
Gene Length | 2799 bp |
Protein Length | 932 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640932915 |
Product | diguanylate cyclase |
Protein accession | YP_001473766 |
Protein GI | 157375166 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0571217 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAATCAT TTATTAAGCT TCTGTCATTT TTGCTTGTCT GCTTTTTTGC CTCCGGACTC TATGCCGATG AGGGCAAACC GTTGGTCTTA GTAATGGGAG AAGATAGTTA CCCTTACCAG TTTGTGGATG AGAAAGGTGA GCCCCACGGA ATTCTTATTG ACTTGTGGAA AGCCTGGAGC CAACAAACGG ATACTGAAGT CGTTTTTGTA TCACGGCATT GGCATGACTC ACTCAAACAA CTCTCTCAGG GAGATGCCGA TGCTCATGTT GGTTTAGCTC AGACTTCAGT GCGTTCAGAG ATATTTGATT TCGCTGGACA GATATCCCAA GTCAGAACCT ACCTTTATCT GCATAAAAGC CTCTCCGACA GAACATCATT TTCAGATCTT ATCCCCTATC AAATTGGTAT AGTGTCAGGT TCCTCTCACG AAGCCGAATT GCTTGCTCTT GAGCCTAGAT TATCCTTTAA ACGCTACAAC AGCCGTCACA GCTTATTAAA AGGGGTAATT GAAGGAGAGG TGCATGTTTT TGCTGGAATG GAAGGCTACC TTAAAGACAA TAACCTGAAT CGACAGGTCG TCAGCCTTTT TCCCATAAAG AACCGACTCT TGATAAAAGA GTCGCCTCTG CATCCGGCTG TTATCAAGTC AGATTTAAAG ACTGTAGATA AGATAAACTT AGGATTTGCG GCAATTTCCA GTAAGCGTTT TGCTGCGATA GAGGAACGTT GGCTTGGCAT TAATCAGCAA AAAAGAGGGA TAACGGTTGC GACAACACTC AATATTGAAC CTTTCGTCTC TCTAGGAGGT GATGGGCTGC CCCATGGTTT GTATGTGGAT ATTTGGCATC TGTGGTCTGA AAAAACGGGG ATCCCGGTCT TCTTCTCGAC AGGAGATATG AACAGCTCAC TCGATGATGT TCGAATGGGC AGCGCCGATG TCCATATTGG CTATCCAGAG AGTGACGCGC TTAAGAGTGG CCTACTGAGA AGCCAATTAT TGTACAAGGT AAAAAGTCGA TTATTTAGTT TCGGTCATTC AATAGATAAC TTAGATGCAC TCGCCGGGAC ACTTATAGGT GCGGTACCGA CGTCTCCTTA CCTTGGGAAG TTAAAACAGG CCGTTCCGAA TACACAACTC AAACTATATG ATTCTGTAGC GTCTATGATC CAAGCGGCGA GAGAGGGGCA TATCAGCAGC TTCGTCGCAT CGTCTGCATG GACCCAACAT TATCTCGTTT TGAATCATGC CTGGTCTGAG TTTCATCAGT TTGATGACCT TGAATTTGAA ACCGATATCT TTGTGTTAAC CCGACCCGAG AATGTGGGGT TAGATAAACG TATCAAGGCG GGCTTCGAGT TAATTGGTCA AAATGAATTG GCTGAAATTG AACAAAAATG GATGCTTAAC AGTAAAAATC GGGTATTCGA TGTTGAAAAT TCGCGATTGG AATTCTCGCT ACCACAACGA GACTATCTGG CATCTGTAGG TGTATTAAAA GTGGGTTATC TGAATAATTG GAAACCAATG GAATATGCCG ACTCAAACGG TGAGTTTTCC GGAATTAACA GTGAAGTTGT AAAGCTTATC TCAGATAAGC TTAATTTGAA GTTAGAAGCT GTCGTTTATG ATGAATGGCA GGATTTGATC ACAGCACTAC TCAATGGTGA TGTTGATATT GCCGGCAGTG TGGCTGAGAC TGAGGAGCGA AAGAAGAAAC TACTCTTCAG TGATCCTTAC TGGCCATCGC CATGGGCCTT GGCGACACCA ATAGATCGAG TATCTGTATT TCATATGCAA CAGTTAGCGG GTCAAAGGCT GGCCATCGTC GAAGGTTACC AACTTGTATC CGATCTAATG AGCGCCGATT ATGGCCTGGA TTTGTTGATT GTTGCCGATA CACGTGCTGG CCTGAAGGCC GTATCAGAAG GGAAAGCCGA CGTTTTCGTC GAAAAAGTCA TCAATATGGC CGCTGAACTT AAACAGGGTG ATTATGGACA ACTCAAGATG TCCGTATTGG CAGATTTTTC TGACCAGCAC AGTCACTTTG GGATCCATCC TGATAAAGCA AAATTAGTTC CTATGATAAA TATGGCAATC GGCACGGTAA ATCAGCAAAA ACAGCAAGAG ATCTATCAAA ATTGGGTTAA ACAACTACCT CTTGCACCAA AAGCATCGCT AGCTGAGACT TGGTGGTTTT TTATCTGCTT CCTTACACTC GCTTCGATAA TGTTCCTCGT TTTATTCAAG TATCGAATGG GACAAGAGAT CAGCAAAAGA TTAGTGTTAG AAGATAAACT TAATCATCTT GCTAACCATG ATAGCCTTAC CCAGTTACCT AACCGCTCAC TGTTAGATGA TAGATTAGAG CAGGCTGTGC TTCATCATAG CCGGGACTTA AGTGCATTTG CTGTACTCTT TGTTAATATC GGTTGTCTCA AAGAGGTGAA TAAAAAGCAA GGTCACAAGA TGGGTGATAA CTTGCTCATC AGTATCACAC AAGAGTTGCA ACAGTCGGTT AGAAAATCTG ATACTGTGGC AAGGTTCGGC GCAGATGAAT TTGTTATTAT ATTGAACCGA ACCAAAGATC TGGACATCGT CTGCCAGGTC GCCGAAACAA TCTTAACTAA TTTAGCAAAA GATCTCGTTG GCGACATACC AGCCCAAGAT GTGAAGCCAA GTATTGGAAT TGCTATTTAC CCCGCGGATG GTGATACGGC TGTCGAGTTA TTAAAAACAG CTGACAAGTT AATGTACCGC GCGAAAAAAA GTGGTGGAAA TTGCTATAAA TCATCGTGA
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Protein sequence | MKSFIKLLSF LLVCFFASGL YADEGKPLVL VMGEDSYPYQ FVDEKGEPHG ILIDLWKAWS QQTDTEVVFV SRHWHDSLKQ LSQGDADAHV GLAQTSVRSE IFDFAGQISQ VRTYLYLHKS LSDRTSFSDL IPYQIGIVSG SSHEAELLAL EPRLSFKRYN SRHSLLKGVI EGEVHVFAGM EGYLKDNNLN RQVVSLFPIK NRLLIKESPL HPAVIKSDLK TVDKINLGFA AISSKRFAAI EERWLGINQQ KRGITVATTL NIEPFVSLGG DGLPHGLYVD IWHLWSEKTG IPVFFSTGDM NSSLDDVRMG SADVHIGYPE SDALKSGLLR SQLLYKVKSR LFSFGHSIDN LDALAGTLIG AVPTSPYLGK LKQAVPNTQL KLYDSVASMI QAAREGHISS FVASSAWTQH YLVLNHAWSE FHQFDDLEFE TDIFVLTRPE NVGLDKRIKA GFELIGQNEL AEIEQKWMLN SKNRVFDVEN SRLEFSLPQR DYLASVGVLK VGYLNNWKPM EYADSNGEFS GINSEVVKLI SDKLNLKLEA VVYDEWQDLI TALLNGDVDI AGSVAETEER KKKLLFSDPY WPSPWALATP IDRVSVFHMQ QLAGQRLAIV EGYQLVSDLM SADYGLDLLI VADTRAGLKA VSEGKADVFV EKVINMAAEL KQGDYGQLKM SVLADFSDQH SHFGIHPDKA KLVPMINMAI GTVNQQKQQE IYQNWVKQLP LAPKASLAET WWFFICFLTL ASIMFLVLFK YRMGQEISKR LVLEDKLNHL ANHDSLTQLP NRSLLDDRLE QAVLHHSRDL SAFAVLFVNI GCLKEVNKKQ GHKMGDNLLI SITQELQQSV RKSDTVARFG ADEFVIILNR TKDLDIVCQV AETILTNLAK DLVGDIPAQD VKPSIGIAIY PADGDTAVEL LKTADKLMYR AKKSGGNCYK SS
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