| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2023 |
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| Symbol | |
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| ID | 5614051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2447569 |
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| End bp | 2449317 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932909 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_001473760 |
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| Protein GI | 157375160 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAA GCATTTTGCT CATAGCGCTC AGCTTTAGTC TCTACCTAAG TGTCAATTCG
GCGGCTCTGT CCGCCGTATC TCCTCTCCCC TTGCTCGTTG AGCAGTGCCT GCAGCTGCAA
CCACCTGAAC CAGTTCTTAT CTCGTCGCCG AATCCCTTGC GTGATATTGA AGATGCCGTA
GCCAAGAGCC GTGCATTAGA GGCCTCAATG TTGGGGCTGT TTAATGTCAA AGATCGCCTG
CGATACTATA AAAGCATGGC CATATCACCC AAATACCAGG AAAGTTTACT GCAATGCCAA
CTTCACCTGG CCGATCTGAT GGCAGAGACA TTAGCGTCAC CCGCATTAGC TCAGCTACTC
AGCTTCAATA ACCAAGAAAA CCAAGACAAC CAAGAGCTGC TTCAATTAAG TTTACGCTGG
AGTGATCTTG TCGATGATAA CGCCAATTTA CCCCACAAAT CTCAACTTCA TACGTCACAA
GCCGCGGTGA AGCTAGGCTT ACGCTCCCAA GCGTTAACAT TGCAGTTCGG CAATACTCAC
TGTGATATAA ACCAGGGAAA AGAAACGAAA GCGGTACTGC AAACTAAAAG CAAATCCTTC
GACAAAAATA TCGCGGCTTA TTTGATACAA CAAAAAGACT CACGTTGCCA ACAGCTTGTT
TGGAATGCCT ACCAGGGCCG TGCCCGTGAA AAGAACGCAG AAGCATTAAC CCGTATCGCT
CGATTAAGAA ACGAGAGCGC GGCTCAAGCA GGCTTCAGGG ATCACACCGG CTACTCACTA
TCAAAACAGT TTCTTTCAAA ACCGGAACTT GTAAAAGCCT ATTTGGATTC TGTGACTAGA
CGAGTAGACT CGCCGCCCTG GCAGTTTGGT ACCAGCCTCA GCCAAAGCAG GATAACCGAG
GTAGCGCCAT TAGATTCGGT TTCGATGCTA ACCCGTTTGT ATAAGGCCGC TGAACCACTC
GGCTTTCACG TTGAAATAGT GACAGATAAT ATTCATCGAG TGTGGCACAG GCGCAGATTA
TTAGGTGACA TATTCTTAGG TGAAGCCCCC TATATTCGTG CACAGACTCT GCGATTTCCA
GTTGTTGGGA ACCAATTTGG ACAGATGCAA ATATCATCTA AGCCTCTGCT CAATAGCTAC
AGAGAGCAGC AAGCCTTGAT TAAAGCTACG GCAACAGTCT TAGCTACGTT ATCGTCCAGC
AGCCACCATT ACCTTATCAA TGCGTTAGGT GAAACGGGAG ATACTTCTAA ATTAGGTAGG
CTTTGGTTAG AGTATTACCT TACAGATGCT ATTTCCCTCT CTTTAGATGA CAACAGTCGT
GAGCAGAAAT TAGCGTCGTA CGGTCGACAG CTAAAGGTCT TTAGAGCGAA GGTCGCACTC
AATTTTTACT CCGATACAGA ACCAACACTC TATCCCAATC TGAGCGATGA GTTTATTCGC
GCATTCGGGC AAGCCTGGAG TGAATCACAA AATTATGCTT ACAACTTCTT TGCCATTGCC
GAAGAAGGCC CAATTTATTA TCAAGATGTT TGGCAAGAGT CTCTGGCCAA CTTTGTTTAT
CAAACAACCA AAAACTGTCA GGAACAATAC AAAGTTTTTG ACATACTTAT GATTAATGAA
CCCTCCTCGC GTCTGGAGCA GAGACTTGAG ACACTCTTAG GTTCACCCAT CGATGCCAAC
TCTCTAATTA AAAGGATACA TGATGCCACC CTTCCTAAAA ATCAGCGTCC TATCACTTGC
TCTCTTTAG
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| Protein sequence | MPKSILLIAL SFSLYLSVNS AALSAVSPLP LLVEQCLQLQ PPEPVLISSP NPLRDIEDAV
AKSRALEASM LGLFNVKDRL RYYKSMAISP KYQESLLQCQ LHLADLMAET LASPALAQLL
SFNNQENQDN QELLQLSLRW SDLVDDNANL PHKSQLHTSQ AAVKLGLRSQ ALTLQFGNTH
CDINQGKETK AVLQTKSKSF DKNIAAYLIQ QKDSRCQQLV WNAYQGRARE KNAEALTRIA
RLRNESAAQA GFRDHTGYSL SKQFLSKPEL VKAYLDSVTR RVDSPPWQFG TSLSQSRITE
VAPLDSVSML TRLYKAAEPL GFHVEIVTDN IHRVWHRRRL LGDIFLGEAP YIRAQTLRFP
VVGNQFGQMQ ISSKPLLNSY REQQALIKAT ATVLATLSSS SHHYLINALG ETGDTSKLGR
LWLEYYLTDA ISLSLDDNSR EQKLASYGRQ LKVFRAKVAL NFYSDTEPTL YPNLSDEFIR
AFGQAWSESQ NYAYNFFAIA EEGPIYYQDV WQESLANFVY QTTKNCQEQY KVFDILMINE
PSSRLEQRLE TLLGSPIDAN SLIKRIHDAT LPKNQRPITC SL
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