| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2012 |
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| Symbol | |
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| ID | 5613931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2435236 |
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| End bp | 2435916 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932898 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_001473749 |
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| Protein GI | 157375149 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.203186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTAC AGGAACTATA TTCCACTCCC TCGCCGTCGA TAAGTGTTAA TTCAAGTGGT
TACACAAGGA GTGAAGAAAC GGCAAATAGC ATGAGCCATG CTCTGGGTGT AATAGCCGGG
ATAATCGGTC TTATTTTTTC CCTGATCAAA GGGCAAGAGA CACTAACAAA TATTCAGTTA
ATCGGTGTTG TCATTTATTG TGCCAGCATC ATACTGCTTT TCGCCTGTTC GACTCTGTAC
CACTCAGTGT CAGATCCAGC ATTAAAACAT AAACTTAAAA TCGCAGACCA TTGCGCAATC
TATTTCTTGA TTGCAGGAAC CTATACCCCC TTGATGTTAA TCGCCCTCAC GGGCACTCAA
GCAAAGGTGA TCTTAATTTC AATTTGGTCT TTAGCCTTGG GTGGTGTGCT TTTTAAAACC
CTATTTATCC ATCGTTTCAA GAAGTTTAGT GTCGCTCTTT ATCTGATTAT GGGATGGTTA
TGCATGACCG TCATCAATGA TCTGATTTCA GCCATGTCTC CACTTGGTTT CCAGCTATTG
TTAACCGGCG GAATTTTTTA CAGTCTGGGG GTAGTCTTTT ATGTAGGTAA AAGAATACCT
TATAACCATG CTATCTGGCA CCTGTTCGTA TTAGGTGGCG CAATAAGCCA TTTCCTTTGT
GTGTATCTGA CACTCATCTA A
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| Protein sequence | MPVQELYSTP SPSISVNSSG YTRSEETANS MSHALGVIAG IIGLIFSLIK GQETLTNIQL
IGVVIYCASI ILLFACSTLY HSVSDPALKH KLKIADHCAI YFLIAGTYTP LMLIALTGTQ
AKVILISIWS LALGGVLFKT LFIHRFKKFS VALYLIMGWL CMTVINDLIS AMSPLGFQLL
LTGGIFYSLG VVFYVGKRIP YNHAIWHLFV LGGAISHFLC VYLTLI
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