Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2009 |
Symbol | |
ID | 5613928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2429778 |
End bp | 2433242 |
Gene Length | 3465 bp |
Protein Length | 1154 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932895 |
Product | hypothetical protein |
Protein accession | YP_001473746 |
Protein GI | 157375146 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.404809 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0304235 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGT CAATGCTTTG CTTGGCCATA ACAGGAGCTT GGGCTCTTAC CGGCTGTGGC GCTGGAGAAG AACCCTATAA GGAACTTCCC AAAGATGAAA AACAGATCAC CACAGCTGAT ATAGACAAGG CCGGCGAACG CCAGTATCTC TATATTCGCA GTGTAGGAAA GGCACCGCGT TATGCCGCAT CAATTCGCGG TTTCTCTCAG GGTACACCAA AATTGGTCAC GCTACGCAAG ACTGCAAATG GTATTCAGGT GCGCCAAATC GATCGTGATG CCATTGGACT GGATCATGAC TCTCGTTATG ACGATGAATA CAACGAAGCT CCTGTGCTGA CCATTCCCGG TAAGTATATC GATTACAAGT GTACCGAAGA CAGATGGCGC GAATGTATCA ACGTCGAAGA GGAAAACAGG GACGCCGATC TAAAGTGGCA GGACAAAAAC TATTTTATTC CGGACTTTGC CGAGACTAAG ATTGCCGAGC TGGGCATTAA CGATCTATTT ATGTTCGGTC AATGCGTTAC CGAAACCGAA GATCCACGCC TGGTCAACAG CGGTGACTGG AAAGGCTATG AGATGGATCT GGCCAAGGGT GTCATCAACA TCGAAATCGA GCACACCTAT CAAGCCGAGC CACAGTGTCT CAATAAGTTC TATAATGGCA GCCTGGATAA CCTCTCATTT ACCAGCACAG AATATATCTC TATCGTTGCC ATCGATGAAC TGGCAAATAA AGAATATCAG GCGATCCCAT ACAGCCCGAA CGAAAATGGA ACCTACGGAT TCTTCACCTC GGATCACAGC TATCGCGATG CCACTGACAG CGCCGGTGTC GATGGATATG TTCGTACCTA CATGAACCGG GTCGATCCAA CCAAGAAGAG CTTAACTTAC TATCTGAGTA ATAACTTCTT CTTGCCAAAA AACAAGCCAT ATTTAGACGC TGCACATCAA ACGATCACAG CGCTTAATAT CGAAAATAAG CTCTACAAGA CAGGCTTCCC GGAGCTTATT ATCGAACAAG CCCATGATAA GCGTCATGGT GACTTGCGCT ACAGTAACAT TACGCTGTTC GATGAGCCTC TCGATAATGG TTTAGCAGGC TATGGTCCCT CTGCCGCTAA CCCTGCAACG GGTGAAATCG TCAGTGCCCG AGTGAATCAG TACAGCTCTA ACCTGAAACA AGGCGCAGTG CGTTATTATC GCCAGGTTCG CCTCGATTAT AATCGTGGCA AGTTAGACGC ATCATCTGCG GCAGAGCTCA CTGGTGTACC TTACTCATCA ACCGCTACAG CGGAAGTTGT AAAAGTTACC GACACAACTG CAGATACAAG CATGTTTGCT AAGCCTGAAA CCACTCTTGA GGTTGCGGCC AGCACGCTTC CAAAATTACC GGTAGACAAC ACTTTCGAAA ATTTAGTCGA ATTTGATGCC GATACACAGG CATTCTGGTC AGAAAACAGC ATGATGCATG TTGATACGGT ATTTGCCGAA GGTGGTCAAA ACCGTGAGCT CCCAAGGGGT GTTAAAGATC ACGAGATCAA CTGGAAAAAT CCATCCTTGT GGGTCGATGG CAGCATAGGC AATAAACTTA TTGCCTTCGA AGAGATGCCA ATCGCTTTGC AAGATGAACT AACGACTCAA CTTGCGGCTC AGGCTTTCGC CGGAACCCTA AGTCACGAGC TTGGTCATAC TTTCGGTTTG AGACATAATT TCTCCGGTAG TACCGATGCC GATAACACCT TCAGTGAAGC TGAGCTAAAA GCACTCAATG ATCAGTTTTC TGCAGCGGGT TACCCGAACC TGACGGCTAA AGCAGAATTC TCAAGCCAGA TGGACTATAA CGTCAACCGT TTCGCGACTA TGCTGCAGCC CTACGACTTA GCCGCGCTTC GTTTCGGTTA TGCCCGTGAG GTCGAGCTTA AAGGCGAGCC TGAAACAGCC ACTAAGTTTG TATCTCTTAA AGAGGAAGAT GAGAAGCGTC GTCAGGAACT TATTGATGGT AACGTCAATG GAGACACGCG TTTTGGTGCG CTATATAACA TTGCTCAACA GCACGACTTA CGTAGTTACT CTTTCTGTAC CGATGGTCAT GTATCATTGA ACAGCAACTG TAACCGTGGT GATGCAGGCG AAAACTTAAA TGATATTGCC CAGTTCTATA TAGATAAGTA TAACGATAGC TATGAAACCG CGAACCTGAG ACATAACCGT CAGACCCTGT TCGAAGATCA TACCCTAAGC TATACCGTAG GCCGTAAGCG TCGTTTCGAT GAAATTCGCC AATTTGTCGA AGACATCAGT AGCCTGGAGA ATATTTTCGG ATTACCTGAA AACTACTTCG TCGAGCCATG TAAAGATGAT TCTGCAACGG CCTGGTATTG TAGCAATCAA CGAGCCTTGA ATGATGCCGC TCAGTTCTTT TTAACGCTCG CCGGTGAAAA TGATGCAAGC GTCGATGTGA CTTTCAAGAT GGTCGAAGAT GGCTCTGTTG CCATGAGAAA GTCCTATAAC TTCGCCGAAC TGCTGGCCCA GTACCGTTTC AAGAGCGGTG ATATGAAAGC TCAGTTCGAG CCGGGTGAAG TTATCAGTAA GTTCTCTGAC TCACCGGAAG CCCTTAAAGA TCTGATCCTT AACTACGCGA TTAACCCAAG CTTCCATGAC AAGCTGGATA TGGATGTGAC CTTCTCGGGT CGACTACTTA ACGGTATTAA GGTACCAGCA TCGTCACCCA ACCACCCTTA TGTCAACGAA CGTGATGTAT TAGGTGTTTG GCCTGACAAA TTACTTGCGG TTCGTGCCTT AGTCTCCAGA ACGACTGCTC GCAGTACGAC CGGACGTGGC TATAAGGCAC TGGTTGATCT TCCTGAAGTT GGTAATGACT TCAAGGATAT GCTGTGTAAG ATGGTAATGG GAGACGGTCC GGGACTCACA AATGGCGGCA CAGCGCTATT TGTCGAGTCT TGTGGTGCAA GCGGCAAACT TAATGAGTTA TTGCCTAACT ACGTCGACTT TGCTACTCAG AGTATCGAGC CACTGCCTAA CTACGATCGC ATGGTGTCAC GCTATTTTGG TTTCGATACC GTCAATGGTC AGCCTAAAGG TAAGAGCAAT CTTCTGGAGC TGATGTTACG TCAAGTCGTT CTCGCCTCCG TAGATAGTGA CTATCAGGGA GAGCAAAAAG CAAGGATCTG GCGTGAATAT GTGAGCATCC ACCTGGCGGG ACCGGCACTT GACTCGCAAG CAGAGATTAA GCTGAACGGT CTTATTTACG TTGCTACATC TGAAAATACA CTGGCGATGA ATCTAATCAC CCGTATCCAG AGTGTTGAAG CGTTCATAGA AAGCAACCCT GATTCGATGG ACATTAAACT TACCGCGGGT ACGGTTGGCG AGATATTGAA TGGCCAGCTC GAACGTGACC GTTTAGTGCT CACTTATCTA CCGGTTACCT ATTGA
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Protein sequence | MNKSMLCLAI TGAWALTGCG AGEEPYKELP KDEKQITTAD IDKAGERQYL YIRSVGKAPR YAASIRGFSQ GTPKLVTLRK TANGIQVRQI DRDAIGLDHD SRYDDEYNEA PVLTIPGKYI DYKCTEDRWR ECINVEEENR DADLKWQDKN YFIPDFAETK IAELGINDLF MFGQCVTETE DPRLVNSGDW KGYEMDLAKG VINIEIEHTY QAEPQCLNKF YNGSLDNLSF TSTEYISIVA IDELANKEYQ AIPYSPNENG TYGFFTSDHS YRDATDSAGV DGYVRTYMNR VDPTKKSLTY YLSNNFFLPK NKPYLDAAHQ TITALNIENK LYKTGFPELI IEQAHDKRHG DLRYSNITLF DEPLDNGLAG YGPSAANPAT GEIVSARVNQ YSSNLKQGAV RYYRQVRLDY NRGKLDASSA AELTGVPYSS TATAEVVKVT DTTADTSMFA KPETTLEVAA STLPKLPVDN TFENLVEFDA DTQAFWSENS MMHVDTVFAE GGQNRELPRG VKDHEINWKN PSLWVDGSIG NKLIAFEEMP IALQDELTTQ LAAQAFAGTL SHELGHTFGL RHNFSGSTDA DNTFSEAELK ALNDQFSAAG YPNLTAKAEF SSQMDYNVNR FATMLQPYDL AALRFGYARE VELKGEPETA TKFVSLKEED EKRRQELIDG NVNGDTRFGA LYNIAQQHDL RSYSFCTDGH VSLNSNCNRG DAGENLNDIA QFYIDKYNDS YETANLRHNR QTLFEDHTLS YTVGRKRRFD EIRQFVEDIS SLENIFGLPE NYFVEPCKDD SATAWYCSNQ RALNDAAQFF LTLAGENDAS VDVTFKMVED GSVAMRKSYN FAELLAQYRF KSGDMKAQFE PGEVISKFSD SPEALKDLIL NYAINPSFHD KLDMDVTFSG RLLNGIKVPA SSPNHPYVNE RDVLGVWPDK LLAVRALVSR TTARSTTGRG YKALVDLPEV GNDFKDMLCK MVMGDGPGLT NGGTALFVES CGASGKLNEL LPNYVDFATQ SIEPLPNYDR MVSRYFGFDT VNGQPKGKSN LLELMLRQVV LASVDSDYQG EQKARIWREY VSIHLAGPAL DSQAEIKLNG LIYVATSENT LAMNLITRIQ SVEAFIESNP DSMDIKLTAG TVGEILNGQL ERDRLVLTYL PVTY
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