Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1974 |
Symbol | |
ID | 5612487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2384888 |
End bp | 2385559 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640932858 |
Product | two component transcriptional regulator, winged helix family protein |
Protein accession | YP_001473711 |
Protein GI | 157375111 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.667108 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAAATT TATTACTTGT TGAAGACGAC ATAGATCTAG CGACTGCTGT AATCGAATAC CTTGAGATGG AATCAATACA ATGTGATAGT GCCTACAATG GTTTAACAGG CATGAATCTT ATCGAGAATA ATGACTATCA AGTCATTATT CTCGACCTCA ACCTTCCTAA AATGGATGGG CTTGAAGTTT GTAAGAAGAT GCGAGAGCTG GGAGATGACA CACCAGTACT CATGCTAACA GCAAGAGATA GCCTTAATGA TAAAGTCGCA GGTTTTAATG CTGGTACCGA TGACTATTTG GTTAAACCTT TTGCAATGGA AGAGTTAATT GTAAGAATCA AAGCGCTGTC TTTACGCAGA AGCGGTCAAA TAAATAACCT TAGCGTTGGT GATCTTACCG TCGATTTAGT GAGAAAAATT GCAGTTCGAG GAGGACGAGA GCTTAAACTT TCTCCCTCAA GTTTTAAATT ATTAGAGATA CTTATGAGGC AAAGTCCAAT GCCCGTCTCA AGAGAACATT TGATGCAAGG TCTTTGGGGT GACGATCAGC CAGACTCTAA TAGTTTAAAG GTGCATATCT ACAAATTAAG GAAAGAATTA GAGACAAATG CTGACACGCC ACTTTTACAT ACAGTTACAG GACATGGTTT TTCAATTAGA GAATCGTTAT GA
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Protein sequence | MLNLLLVEDD IDLATAVIEY LEMESIQCDS AYNGLTGMNL IENNDYQVII LDLNLPKMDG LEVCKKMREL GDDTPVLMLT ARDSLNDKVA GFNAGTDDYL VKPFAMEELI VRIKALSLRR SGQINNLSVG DLTVDLVRKI AVRGGRELKL SPSSFKLLEI LMRQSPMPVS REHLMQGLWG DDQPDSNSLK VHIYKLRKEL ETNADTPLLH TVTGHGFSIR ESL
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