| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1958 |
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| Symbol | |
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| ID | 5610598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2366676 |
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| End bp | 2367488 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932842 |
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| Product | putative peptidyl-prolyl cis-trans isomerase, PpiC-type |
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| Protein accession | YP_001473695 |
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| Protein GI | 157375095 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.687003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.983285 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAT GTGGCACAAG TACCCCAACA ACCCCATCTA AAGAATCATT GCCAGTTATC
TGTGTAAATC GTGTGACTAT TGAAGAGACT GCACTCGCTA ATGAGCTTCA ATATCACGCA
CACAAGAATT TTGATGTGGT TGTTCAACAA GCCGGGCAGA CATTGGTCAT CAGGCAATTA
CTGGTTGAGC AGGCTAAAAA ACTAGACCTG GATGTGTCAG GTGATAATGA AGAGAAAGGG
GTTCAGAAAC TGTTAGAGAC TCAGGTTATT TATGACGACC CTAAAGAGGA CGATTGTCAG
CGTTATTTTG ATAATAATCG TGCAAAGTTC ACCACTATGC CGCTGATGGA GGTCGACCAT
ATTCTGCTAG CTGCCGCAAA AGATGACATC AAAGGCAGAG ATGACGCTAA AACAGATGCT
AATGATATTA TCAGCCGACT TCAAGACGAC CCCTCTCTTT TTGCTGATCT GGCTAAACAC
CACTCGGCTT GCCCCTCAAA GGAAACCGGA GGGTCGTTGG GTCAGATCAG TAACGGACAA
ACGGTTCCCG AGTTTGAACG ACAGCTGATG CTGTTACCCG AAGGCCTGGC CTCTAAGCCA
CTCGAATCTC GCTACGGCTT GCATGTGGTG AATATCGCGA GAAAAATTGA GGGTAAGCCA
CTCGAGTATT CTATGGTTTA TGACAAGGTT CGCGGTTACC TGGTTCACAG AGCATCGCAT
CTTGCGATTC AAGCCTATAT TCATAACTTA GTCCAAAAGG CTGATATTTC AGGTATCAAA
GTGATGTTTG CTGATGAGAA TATTCACGTT TAA
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| Protein sequence | MSSCGTSTPT TPSKESLPVI CVNRVTIEET ALANELQYHA HKNFDVVVQQ AGQTLVIRQL
LVEQAKKLDL DVSGDNEEKG VQKLLETQVI YDDPKEDDCQ RYFDNNRAKF TTMPLMEVDH
ILLAAAKDDI KGRDDAKTDA NDIISRLQDD PSLFADLAKH HSACPSKETG GSLGQISNGQ
TVPEFERQLM LLPEGLASKP LESRYGLHVV NIARKIEGKP LEYSMVYDKV RGYLVHRASH
LAIQAYIHNL VQKADISGIK VMFADENIHV
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