| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1850 |
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| Symbol | |
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| ID | 5611868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2226589 |
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| End bp | 2227260 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932726 |
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| Product | ribonuclease T |
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| Protein accession | YP_001473589 |
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| Protein GI | 157374989 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000591528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA TTTGCGACGC CAATAAATTA AATCACCGTT TTCGAGGCTA TTTTCCCGTT
GTCATCGATG TTGAGACAGC CGGGTTCAAT GCCCAAACAG ATGCGTTGCT TGAAATCGCC
GTCACCATGC TAAAAATGGA TGACGAAGGT GTACTCGGTT TAGACAAGAC TCTGCACTAC
CATATCGAAC CTTTTGAGGG AGCAAACCTG GAGCCCGAAG CACTCGCTTT CACCGGTATC
GATCCAACTA ACCCGCTTCG TGGTGCTGTC AGCGAAAAGG AAGCATTCTT AGAGATCTTT
AAAGAAGTTA AGAAAGCGCA AAAAGCCGCT GGCTGTCACC GCAGTATAAT CGTAGCGCAT
AATGCGGCAT TCGATCATGG CTTTGTTTCA AAAGCTGTCG AACGTAACGG ACTAAAAAGA
ACACCTTTCC ATCCTTTTGC CACCTTCGAT ACCGCGACTC TTGCGGGATT AGCCATAGGG
CATACCGTCC TTGCAAAAGC CTGTTCAATT GCCGGTATTC CCTTCGACAA TAATGAAGCC
CATTCTGCCT TGTACGATAC CGAGCGCACC GCAGAGCTTT TTTGCTTAAT CGTTAACCGT
TGGAAGGCAT TAGGCGGTTG GCCATTAGCC ACGCCCGATG AGTCGACACT CGAAACGGAA
AGTGAAGCGT AA
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| Protein sequence | MSEICDANKL NHRFRGYFPV VIDVETAGFN AQTDALLEIA VTMLKMDDEG VLGLDKTLHY
HIEPFEGANL EPEALAFTGI DPTNPLRGAV SEKEAFLEIF KEVKKAQKAA GCHRSIIVAH
NAAFDHGFVS KAVERNGLKR TPFHPFATFD TATLAGLAIG HTVLAKACSI AGIPFDNNEA
HSALYDTERT AELFCLIVNR WKALGGWPLA TPDESTLETE SEA
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