| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1831 |
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| Symbol | |
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| ID | 5612368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2204358 |
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| End bp | 2207399 |
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| Gene Length | 3042 bp |
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| Protein Length | 1013 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932707 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473570 |
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| Protein GI | 157374970 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.85531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTA TTAGGGAAAA ATTCAGTAGT CTGTCGAAGA AATATAAACA ATTACCTAAG
TATCAGCGAT ACCTCTCTGC TCTATTAGCT TCATATCTCT TCTTCGCCGG TATCTTAGGT
CTGGTTGTTC CCTACGCCGT CGAAAAACAG CTTCCGGTGC AATTGGGCGC TATGTTAAAA
AGACCTGTAC AGCTCGATGA AGTCAAGATA AACCCCTTCA CTCTTAACGT CTCCTTAACT
GGCTTTAGAA TCGATGAGAC AGACCATGGT GACTTTATCG GTTTCGATAA GCTAAATTTT
GAACTCTGTT TTTGGCACTC CCTATTTAAT GGAGCGATCA GCATTGACCA TGTGACATTG
AACGCCCCTT TCGTTTTTAT AGAACGCTTA AACTCGAAGC AAAAAATTCA GTTTAACTTT
TCAGATATTC TGGCTGAGCT GGCAAAGTCT TCCGAAGTAC CTCAAGCGCC ACCAGATAAA
GCGAATGCTT TACCCCATGT GATAGTTGAA AACCTGTCGA TTGCTAACGC CGATCTTCTG
TATTCGGATA ACGTCACCAA CGGCCAGATA CATTACCCGG CTGTCAACCT GAAGGTGAAA
GCGTTCGATA CCTTAAATGA GATAGCAAGT GCCGCTTCAG GAAATCACTT TTCCATTCAC
TTTGTAGGAG ATGAAGGGGG CGAGATTTCC ACACAGGGAC AGATACAGGT ATCTCCCCTC
AATATCGTTG GCGAATTAAA GTTAACCGCA ATAAAATTGC CACAGTTTTG GTCTTTTATC
TCCGATGATT TTCAAGCTAA GCTCGACACC GGACAGTTGA ATTTTAAGAG CCATTTTGAA
ATCACGTCGC ACGCAACATC GAATCAGGCG CCGATTCAAG TGGTCACCAA CCAAGGGGCC
TTTTCTTTAG AAAACATCCT GTTTTCCCAT GAACAGCGTC CTCTGATGAC CTTGCCATTA
CTGGCCCTCG AAGGCATAGA GCTCAACCTT GAAGATAAAC TGGTAGTGGT TGAACGTCTG
CATAGCGAAA AACTGGATCT GAACGCAGGT ATAACACCTC AGGGAATCGA TATCATTCCG
CTATTTATGC CGAGCTTTAT CTCTAAGGCC GATGACAGTG AGTCGAAGCA GGTAGATGAG
CCTGAGGCGA ATGAACAGAC ACCTTGGTCT GCGACCTTAG GTGGAGTCTC TGTAAAAGAT
TATGCGTTGA ACTTACAAGA AAGTCTGCTC ACCAAAAATA CGCCCTGGCA CATCGCTCCG
ATAAACCTGA CAACAGGGGC AATACAGTCT GATTTCAACT CCCCTATAGA ATACAATTTA
GACTTGAGTA TCAACGGTCA AGGCAAGTTA ACCTCGACCG GCCAGGTAGA GGTCAATCAG
CAGCACCTTA ATGCAGAGCT GCAACTGGCA GGTTTCTCTT TAAAGCAATT GCAGCCCTAT
CTGGCCCCCT TTATTAATAT CACGGTAAAA AATGGTGAAC TCAACTCAAG CGGTCGCTTA
GAGGCAAGTT CCGCCGATGA TATAAGCTTT ACCGGAGATA TCACAGTCAA CGAGCTGCTG
GTCAAAGACA ACCTGCACAA AAAGACATTG TTGAAATGGC AGTCAATGGC AATAGAAGAG
TTAAGCTTTG ATCAGGAAAA ACAGCAATTA GCTATCAGTC AGATTAATTT ATCTCAACCC
TACAGCCGCA TCATCATAGC TGAAGATAAA AGCACTAACT TCCAACAGCT GTTTGTGAGT
ACGGCCGAAT CTGCTGCAGA CAAGACAGAG ACAGGTAAAA ATGCCCCTGA GCAAACAGAT
GCCAGTCAAC AAGCTCCTTT AGCGATACAG ATAGGTAAGA TCACAGTCTC TGACGGTTCG
ACCTTCTTTG CCGATAACTC ACTGACCCCC AACTTTGCGG CAAGTATTGA ACAGGTAGAG
GGAAGCGTAA GTCAACTCTC CTCGTCATCG GACAAAGCCG CGGTTGTCGA TATAAAGGGA
AAAATTGACA AATATGCCCC CGTCACACTC AAAGGAGAGA TTAACCCCTT ACTCGAACAA
CCCTACCTGG ATCTCGATCT TGACTTTAAC AGTGTGGAGC TCACATCCGT TAACCCTTAT
TCAGGCACCT ATGCCGGATA TTATATCGAT AAGGGGCAGC TTTCATTAGA GCTAAGCTAC
CTGCTAAAAG ACAACAAGCT AAACGGCAGC AATCATATCG TCGTCAATCA GTTAAAGCTT
GGAGAGCCCA GCGATAGTAG CCTGGCCACC AGCCTACCCG TAACGCTTGC GATAGCCCTG
TTACAAGACA GACATGGTGT TATCGATTTA GGACTCGAGG TGTCGGGCGA TCTGGACTCT
CCGGACTTTA GTGTAGGGAG TATTGTGATG ACGGCATTGA CCAATGTGAT CACTAAAGCC
GTTACTGCGC CATTTACCCT GCTCGCCGGG ATATTTGGTG ACGATGAAGA GCTCGATAAG
ATTGAATTCA GTGCCGGTAA CGCCCGGATA TCGGATGATC AGAGCAGTAA GCTGGCAACA
CTTGCCACCG CCCTTCTCGA CAGACCTAAG CTAACCTTGA GTATCGAGGG TGCCATCGAC
TCGGCCACCG ACAGCCGTGT GCTGCAAGAG CAAGCTCTGT GGCACAAACT GGCTCAGCTG
AGCCAGCTTG AGATTGAGGA GTTGCCGGAA GCACTCTCGC CGAGTACCTA CCCGACACAA
GGGCCACTCT CAGCAGCACT CATCACCTTG TATGAAACTG AATTAATGCA AGATGCCAAC
GAACTGAAAC AGCAAATTAG CAAGAGTCAT GAACAAGACT CTGCTCTTAG TGAGCCACAG
CTACTGACTC AGTGGCATAT CGCCCTCTAC AACACCTGCC TTAACCGGCA GGTGGTAGAT
GACAATATGT TGGGCACCCT TGCCAGCGAT AGGGCCAGAG CCGTGAAAAC ACATCTGGTC
GATATCGATA AGGTGCCGGC AAATAGAATA TTTTTACTCG ACAGTCGCAT CGATATCAAT
CAGGGCGCAC AGGAGGCGCT ACTGACATTA GGGGCTGATT AA
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| Protein sequence | MSAIREKFSS LSKKYKQLPK YQRYLSALLA SYLFFAGILG LVVPYAVEKQ LPVQLGAMLK
RPVQLDEVKI NPFTLNVSLT GFRIDETDHG DFIGFDKLNF ELCFWHSLFN GAISIDHVTL
NAPFVFIERL NSKQKIQFNF SDILAELAKS SEVPQAPPDK ANALPHVIVE NLSIANADLL
YSDNVTNGQI HYPAVNLKVK AFDTLNEIAS AASGNHFSIH FVGDEGGEIS TQGQIQVSPL
NIVGELKLTA IKLPQFWSFI SDDFQAKLDT GQLNFKSHFE ITSHATSNQA PIQVVTNQGA
FSLENILFSH EQRPLMTLPL LALEGIELNL EDKLVVVERL HSEKLDLNAG ITPQGIDIIP
LFMPSFISKA DDSESKQVDE PEANEQTPWS ATLGGVSVKD YALNLQESLL TKNTPWHIAP
INLTTGAIQS DFNSPIEYNL DLSINGQGKL TSTGQVEVNQ QHLNAELQLA GFSLKQLQPY
LAPFINITVK NGELNSSGRL EASSADDISF TGDITVNELL VKDNLHKKTL LKWQSMAIEE
LSFDQEKQQL AISQINLSQP YSRIIIAEDK STNFQQLFVS TAESAADKTE TGKNAPEQTD
ASQQAPLAIQ IGKITVSDGS TFFADNSLTP NFAASIEQVE GSVSQLSSSS DKAAVVDIKG
KIDKYAPVTL KGEINPLLEQ PYLDLDLDFN SVELTSVNPY SGTYAGYYID KGQLSLELSY
LLKDNKLNGS NHIVVNQLKL GEPSDSSLAT SLPVTLAIAL LQDRHGVIDL GLEVSGDLDS
PDFSVGSIVM TALTNVITKA VTAPFTLLAG IFGDDEELDK IEFSAGNARI SDDQSSKLAT
LATALLDRPK LTLSIEGAID SATDSRVLQE QALWHKLAQL SQLEIEELPE ALSPSTYPTQ
GPLSAALITL YETELMQDAN ELKQQISKSH EQDSALSEPQ LLTQWHIALY NTCLNRQVVD
DNMLGTLASD RARAVKTHLV DIDKVPANRI FLLDSRIDIN QGAQEALLTL GAD
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