| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1798 |
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| Symbol | |
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| ID | 5613227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2166521 |
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| End bp | 2167873 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932673 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001473537 |
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| Protein GI | 157374937 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGC AACCACTTAA AATTCTAGTC GTAGAAGATG AGCCCGATCA ACGTAGCCTG
ATCACCAAGA TGTTGGCCGC CAACGGTTAT CAAGTCAGCA GTGCTTCGAG TGTCGAAGAA
GCCATTGTAA TGATTAAATC GGATCTTCCG GATCTGGTTT TCTCCGATTG GAAACTCGGA
CAACTCAGTG GCATGGATCT GCTGATCTAC GTTCGCCGGG AGCATCCAGA CATGGGCTTT
ATCATAGCGA CGGCCTACGG CACGATAACT CATGCCGTCG ATGCTATGCA GGCGGGGGCC
GATGATTATC TGGCTAAACC ATATCAAAGG CAGTCCCTGT TATTAGCCAT CGACAAGGTG
GCTAAATCAT TAGTCTTGAA AAAACAAAAC CGCAGGCTGA CCTCTGAACT GTCCCAACAG
CAGGAGCTGG TGGGGTTAGT CGGTAAAGCG CCCTGTATGC AGAAGGTTTA CACTCGGGTT
CAGCGTGTCA GCGCCACCGA TGCAACAGTG CTCATCGGCG GGGAGAGTGG GACGGGAAAA
GAGCTCGCGG CTCGGGCCCT TTACCAGCTT TCACAGAGAA AACATAAACC GTTTATTGCG
ATTAACTGTG GTGCCATTCC TGAGTCACTC GCAGAAGCCG AGCTGTTTGG TGCCGAGAAG
GGAGCTTTTA CCGGTGCAAC AGCATTGAAG ATAGGCAAGC TTGAAGCCGC CGATGGCGGG
ACCGTCTTTC TCGATGAGAT AGGCGAACTG CCATTACTGC AACAGACAAA TTTGCTTAGG
TTCCTGCAGG AAGGGGTGAT CAGTCGTTTG GGACAAAATG GGGAGATTAA GTTGGATGTC
AGGGTCATTG CCGCGACCCA CAGAGATCTG CAACACGAGG TGAAAGAGGG GCGCTTTCGG
GAAGATCTTT ACTACCGATT GAATGTCGTG CCGATCCATA TGCCGCCTTT GCGCGAGAGG
CAGGAGGATA TTGGCAGGTT GGTCGAACAT TTCCTAAAAC TCAATAGTAG CCAATACAAG
ATGGATGCCC CCAAGTTATC TGCGGCTACC ATGAAACAGT TACTCGATTA CCCTTGGCCA
GGCAATGTCA GAGAGTTGGC AAACCGTATC GAGCGTTTCG TTTTGCTTGG CGATGAAGAG
GAGATGGTTG AAGAACTGAG TGGTCAACCT CGACCCATAA ACACCAGCCA GTTTTCACTG
CCCGAAACCG GCATCGAATG GGAGGCATTC GAGAAAGACT GCCTGGAGCA AGCGATGAAT
AAGCACCAAG GCAACCGAAC TAAGGCCGCC AAGTTTCTGG GACTCAGTTA CAAGGCATTC
CTGTATCGGC TTGAGAAGTA TCATTTGGTG TAA
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| Protein sequence | MKQQPLKILV VEDEPDQRSL ITKMLAANGY QVSSASSVEE AIVMIKSDLP DLVFSDWKLG
QLSGMDLLIY VRREHPDMGF IIATAYGTIT HAVDAMQAGA DDYLAKPYQR QSLLLAIDKV
AKSLVLKKQN RRLTSELSQQ QELVGLVGKA PCMQKVYTRV QRVSATDATV LIGGESGTGK
ELAARALYQL SQRKHKPFIA INCGAIPESL AEAELFGAEK GAFTGATALK IGKLEAADGG
TVFLDEIGEL PLLQQTNLLR FLQEGVISRL GQNGEIKLDV RVIAATHRDL QHEVKEGRFR
EDLYYRLNVV PIHMPPLRER QEDIGRLVEH FLKLNSSQYK MDAPKLSAAT MKQLLDYPWP
GNVRELANRI ERFVLLGDEE EMVEELSGQP RPINTSQFSL PETGIEWEAF EKDCLEQAMN
KHQGNRTKAA KFLGLSYKAF LYRLEKYHLV
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