| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1790 |
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| Symbol | |
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| ID | 5613045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2157640 |
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| End bp | 2158995 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932665 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001473529 |
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| Protein GI | 157374929 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTTCG GTCTGAACTT TAAACCCAAG AAACGTCTGC TTACGCGGAT GTTTCTCACC
TCTCTGTCTA TCATAGCTTT AGTCGGCTTT GGTCTGGCTT GGTTAGTTAA TCTTCTTCAT
GCGCAAAATA ATTATAATGA GGAGACGGCT CAGCTGATCG CCGAGATCCC CAAAGTCGCC
GCTGAACTGA AAGAGCATGA TCTCATCCCT GAAACCAGTG AGTGGCTCGA TGAAAATAAC
ACCCCGGAAC GTTACGTCAT AGCCAGCTGT GATCAAAACT TTAAACAGGT ATGGACCTCT
TCCCTTGCCG TAGATAGAGG GCTATTTGAT ACTTGTGAGC GTTTCGATGA GATCCGCAAT
GACTCCCCGC CCTATTATCT GAACCTTGCC GATAACAAAG GCTATTTCAT CTATCTGCTG
TCGGTTGAGA TCGCCAGAAA TCAATACAAT TTATTGGTGA TGAAAGACGC TGAAAAACTC
GAAAAGGAGA TGGATAAATT CAGTCGTCGA ACCTATTTCA GGCTAGGTTT GGTGTTGGCT
CTAGCGCTAG TGCTACTGAT CAGTGCCGGA TACTGGGGAA TGCGTCCTCT GGTACGCATG
AGAAATGAAC TGGACAGCGT TAATAGCGGA AAATCGACGG AGTTATCTCA GGACTACCCT
GTTGAATTAG AAGGCGTCAC CCAGGCACTA AACCAACTAT TGGTTCAATC CAGTGCTCAG
CAACAGCGAT ATCAAAATGC GATGAACGAC CTTGCTCATA GTTTAAAGAC CCGATTGGCC
GCAGTGCATG CCATTACCGA TGACGCAACA CTCGACAAGC AGGCCACCAG TGAAAAAATC
ATGGAGCAAG TGAGTCAGAT GGATCAGTTG GTTAAGTATC AACTGAAACG CGCCATGTTG
GGACGCAAAG GCTTGAAGCA GGAGCAAACC CAAGTCGCTC CCTTAGTTAA CCAGCTCTCA
CAAATGTTGT TTAAAGTTTA CCGTGACAAG CAAGTTGAGT TTACCGCTAA TATTCCTATC
GAACATGTAT TCCCGGGGGA TAAAGGTGAT CTGATGGAAC TGTGTGGAAA CCTGATGGAA
AATGCATTTA AACTCTGTAT CAGCCAGGTT AGGGTTTCAG CCAGTTACAA CGATGCCGGT
GAATTTGAAC TGATAGTCGA AGATGACGGC CAAGGCGTTG AAGAGAGTAT CAGGAAGAAA
ATCATTGAAA GAGGTGTCAG GGCCGATACT CAAAAGGCCG GACAAGGGAT CGGACTCGCG
GTATGTAACG AAATCGTCAT CAGTTACAAC GGTAAGTTAT CTATCGAAAC TTCTGAATTG
GAAGGCGCAA AATTCAGGAT CACTATCCCT ATTTAA
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| Protein sequence | MRFGLNFKPK KRLLTRMFLT SLSIIALVGF GLAWLVNLLH AQNNYNEETA QLIAEIPKVA
AELKEHDLIP ETSEWLDENN TPERYVIASC DQNFKQVWTS SLAVDRGLFD TCERFDEIRN
DSPPYYLNLA DNKGYFIYLL SVEIARNQYN LLVMKDAEKL EKEMDKFSRR TYFRLGLVLA
LALVLLISAG YWGMRPLVRM RNELDSVNSG KSTELSQDYP VELEGVTQAL NQLLVQSSAQ
QQRYQNAMND LAHSLKTRLA AVHAITDDAT LDKQATSEKI MEQVSQMDQL VKYQLKRAML
GRKGLKQEQT QVAPLVNQLS QMLFKVYRDK QVEFTANIPI EHVFPGDKGD LMELCGNLME
NAFKLCISQV RVSASYNDAG EFELIVEDDG QGVEESIRKK IIERGVRADT QKAGQGIGLA
VCNEIVISYN GKLSIETSEL EGAKFRITIP I
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