| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1781 |
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| Symbol | |
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| ID | 5610814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2141738 |
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| End bp | 2143102 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932651 |
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| Product | signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein |
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| Protein accession | YP_001473520 |
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| Protein GI | 157374920 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000350892 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGC ATGTTAAGCA CATAATTGAA GGTGTATCTA ATGCTTACGG CCTGGATTTT
TTTGAAAGGC TAACTTTAAA GCTTGACCAG GTCATCGGTG CCGATTTTAC TTTTATAGCT
CAAATTGATG AGAAGAAGCA CGAATCCAAA ACTATTACCT ATGTTGAAAA TGGGAAGTTA
GCCAACAATT TAATTTATTC GTTAACCGAT ACCCCATGCG CCGATGTGGC CAGTAATAGT
GTCTGTTGTT TCCCCAGTAA TGTGTGCTCG CTTTATCCCG ACGATCAGTT TTTAATCGAC
TTAGAGATAG AGGCCTATGT AGGGACGCCA TTGCATGACT CCAAAGGGAA GGTCATGGGC
ATCATTGTGG CCTTATACAA GGCGCCAATT ATCAAACAAG AGTCAGTCAT TACCCTGTTC
CAAATTTTTT CGGGACGTGC CGCTGCAGAG ATGGAACGAC TCGAGTATGA AAGGTCACTG
CAAAGGCTCA ACGATAGTTT AGATCTAAAA GTTCAGCAGC GTACTGATGA CTTGTCGAAA
GTCATAACCC AGTTAAGACA GACTCAGGAA CAATTGGTCG AAGCCGATAA AATGGCGGCG
CTAGGCAAGT TGATTGCCGG CGTCGCACAT GAAGTGAATA CACCGCTTGG GTTAACTATT
ACCACTCATA GCATGATGGA GCTTGAGCTA AGCCGTCTCG ATAAAAAAAT TGCCCAAGGT
CAATTATCAG TCGATGATAT GAATCAATAT CTGAGTAAAA CAGGTCAGGC GTTACAGTTG
CAAGGGGAGA CGTTAATAAG GGCTAAAAAA TTAATTGAAT CTTTTAAACG GATGGCAGCC
GAACAACACT ACCTTGAAGT AGAAACAATC AATATTAAAG ACTACTACCA GCAACTGTTA
ACTACGCTGG AACCATTATG TCGTCCCAAA GATGTAAAAG TTGTCCTTTC GAGCGCAGAG
GATATTTTTA TCAGAACATT ACCGGGTTTA CATGCACAAA TTATCACTAA CCTTGTCAAT
AACAGCATAC TTCATGGTTT TAGTGGTATG CAGAACAATA TCATTACCAT AGAGATAAAG
CAGATCGCAG CAGATGAGAT TGCGGTCGAT TTTTTCGATA ATGGTTTAGG GCTTTCCGCT
AAAAGCGCCG AACATCTTTT TGAACCATTT TATACCACGG CTCGGGACAA GGGAGGGACC
GGATTGGGGT TGTCGATCGT ATATAACCTT ATTGTGCAAC GACTACATGG CGCAATAAAG
GTTAAACCGA GTCAAAGAGG GCTGCATTTG GGTTACCGGC TCAAGGCCGA GAACCCACAA
TTAGTTGAGG CTTTTAATAG GCAAGCCTCC TGCTTTAGTG AATGA
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| Protein sequence | MEKHVKHIIE GVSNAYGLDF FERLTLKLDQ VIGADFTFIA QIDEKKHESK TITYVENGKL
ANNLIYSLTD TPCADVASNS VCCFPSNVCS LYPDDQFLID LEIEAYVGTP LHDSKGKVMG
IIVALYKAPI IKQESVITLF QIFSGRAAAE MERLEYERSL QRLNDSLDLK VQQRTDDLSK
VITQLRQTQE QLVEADKMAA LGKLIAGVAH EVNTPLGLTI TTHSMMELEL SRLDKKIAQG
QLSVDDMNQY LSKTGQALQL QGETLIRAKK LIESFKRMAA EQHYLEVETI NIKDYYQQLL
TTLEPLCRPK DVKVVLSSAE DIFIRTLPGL HAQIITNLVN NSILHGFSGM QNNIITIEIK
QIAADEIAVD FFDNGLGLSA KSAEHLFEPF YTTARDKGGT GLGLSIVYNL IVQRLHGAIK
VKPSQRGLHL GYRLKAENPQ LVEAFNRQAS CFSE
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