| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1778 |
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| Symbol | |
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| ID | 5610811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2137935 |
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| End bp | 2138543 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932648 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001473517 |
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| Protein GI | 157374917 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTT TAGCAATAGG TGCAAACGGT GTTGTCGGAA GAGCTGTGGT CGATCTGTTA
TCGCAAGAGC ACGAGGTGAT TGCCGTAGGT CATAGTCAAG GTGAGATCAC TGTCGATACC
GAGAGTCAGG AGTCTATACG GAGCCTGTTT GAGAGAGTCG GTATGATAGA TGCCATTGTG
AGCACGGCTG GTAATGGCCA GATGGGAAGT CTGGAGGATA TGCCGGATTC AGGTTACCAA
ACCGTGCTAA ACAGTAAGGT GATGGGCCAG GTTAACCTGG TCAGAATTGG CCTGGAGTAT
CTGAATAAGG GCGGCTCTAT AACTTTAACT TCGGGCCAAT CGTCCGTTAA TCCTATGCCG
GGTGCCGCAG CTATCTCCAT GGCTACAGCC GCGGTAAATG CCTTTGCGGT TGCGGCGGCA
CTGGAGCTTA AAGATGACAA GCGATTAAAC GCGGTTAGTC CGGCTTTTGT AAAAGAGACT
ATGGAGATGC TGAGAATGGA CAGCACTTAT GGAATACCAG CCGAAGATGT TGCTACCTAT
TATCAAGCCA GTGTTGAGGG GCAAAGTAAT GGTAAGGTGT TTAATGCCAT TAACGGTAAA
TATGAGTGA
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| Protein sequence | MKILAIGANG VVGRAVVDLL SQEHEVIAVG HSQGEITVDT ESQESIRSLF ERVGMIDAIV
STAGNGQMGS LEDMPDSGYQ TVLNSKVMGQ VNLVRIGLEY LNKGGSITLT SGQSSVNPMP
GAAAISMATA AVNAFAVAAA LELKDDKRLN AVSPAFVKET MEMLRMDSTY GIPAEDVATY
YQASVEGQSN GKVFNAINGK YE
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