| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1755 |
|---|
| Symbol | |
|---|
| ID | 5610768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2108253 |
|---|
| End bp | 2108831 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640932625 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473494 |
|---|
| Protein GI | 157374894 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.196459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.218269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAC CCTTAATCTG GCTTGGCGGG GCAACCTTAG GTGCTGTGAT GCTGGCTGAC
AGACGTGAAA AACGGCATAA GCTGGAGCAT GAACGCCGCA TGGGGAGGGC CCCGTCGATG
CCTGAGGATG GTCAGCATGT CGCACTGAAG CCGAGCCTGT GGCATCCGGG TCATAAGCAG
GTGAAGCCGC AACCCGGCGC CATTATCTGC TGCTTCGTCT ACGGTATGAT TGAACACACA
GGTATCTGGC TCGACGACCA TATTCTTATC GAACTTCATG GTAGCGGATT AATCCGCGCC
GTCTCAACTA ACCGCTTTCT GGCGGGCAGA ACCGGGACAA AAATCTATAT CGCTTGCAGC
CATGATCATC AACCTCTCAT CGATGCCGGT GTACTCGAAC GCGCCGAAGC AGCTATTTTT
CAATATCGGG AATATGATCT GTTCGACAAT AACTGCCATC GTTTTGTCTG GTCATGTTTA
ACCGGGCTCG AGGAGTCTCT CCCAAGTTTT AATGATCTGA ACCTTCGTCT TGCCGCGCAT
TTTAAACAGC AAATTTATTG GGATGAAGTG CTACTCTAA
|
|---|
| Protein sequence | MALPLIWLGG ATLGAVMLAD RREKRHKLEH ERRMGRAPSM PEDGQHVALK PSLWHPGHKQ
VKPQPGAIIC CFVYGMIEHT GIWLDDHILI ELHGSGLIRA VSTNRFLAGR TGTKIYIACS
HDHQPLIDAG VLERAEAAIF QYREYDLFDN NCHRFVWSCL TGLEESLPSF NDLNLRLAAH
FKQQIYWDEV LL
|
|---|
| |