| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1692 |
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| Symbol | |
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| ID | 5610016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2026550 |
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| End bp | 2027287 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932562 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001473431 |
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| Protein GI | 157374831 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00276459 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGAAT ATCAAGCTGC AAAAGATCTA CTTATTAACA AAACGATACT CGTTACAGGC
GCGGGTGATG GCATAGGGCG CGCCGCTGCG TTAAGTTTTG CTGAGCATGG AGCCACGGTC
ATTCTTCTGG GTAAGACAGT TAAGAAGCTC GAAGCGGTAT ACGATGAGAT TGAGCAGGCG
GGTTACCCGA AACCGGCGAT AGTGCCCTTG GACCTGAAGG GCGCAACCGA GCAAAATTAT
CTGGATATGG CCGAAACTAT CGAAGAGCAA TTTGGTCATC TGGACGGCTT GCTGCATAAC
GCGAGCATGT TAGGTGTATT GGGACCATTC GAGCATATCT CTATGGACTC GGTAAACGAA
GTCATGCAAG TCAATGTCAT CGCCGAGATC ATGATGACTA AAGCACTGCT GCCAGTGATG
AAAAAGGCGC CGCAAGCATC GCTGGTATTT ACCTCCAGTG GTGTGGGCAG ACAGGGCCGA
GCGTTCTGGG GCGAGTACGC CATCTCTAAA TTTGCTACCG AAGGCATGAT GCAATCCATT
GCCCATGAAT ATGAGGGTTC TAATATTCGG GTCAACAGTA TTAATCCCGG TGCGACACGT
ACAGCGATGC GCGCCAATGC TTATCCCGCC GAAAACCCAC AAACGCTGAA AACTGCGGCA
GAGATAATGG CCACCTACCT GTATCTGATG GGCAATGACT CTGTTGGCGT CAACGGACAG
CAGCTTAACG CACAATAA
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| Protein sequence | MLEYQAAKDL LINKTILVTG AGDGIGRAAA LSFAEHGATV ILLGKTVKKL EAVYDEIEQA
GYPKPAIVPL DLKGATEQNY LDMAETIEEQ FGHLDGLLHN ASMLGVLGPF EHISMDSVNE
VMQVNVIAEI MMTKALLPVM KKAPQASLVF TSSGVGRQGR AFWGEYAISK FATEGMMQSI
AHEYEGSNIR VNSINPGATR TAMRANAYPA ENPQTLKTAA EIMATYLYLM GNDSVGVNGQ
QLNAQ
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