Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1688 |
Symbol | |
ID | 5610072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2023278 |
End bp | 2023898 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932558 |
Product | SUA5/YciO/YrdC/YwlC family protein |
Protein accession | YP_001473427 |
Protein GI | 157374827 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0009] Putative translation factor (SUA5) |
TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAGT TTTTTTACGT ACATGAAGAG AACCCGCAGG CACGTTTAAT CAATCAAGCG GTGAATGCCA TTAAGAATGG TGGAGTCATT GTTTATCCTA CGGACTCTGG CTATGCGCTG GGTTGTTTAC TGGGTGAGAA GGATGCGATG GCCAGAATTG CGCGCATTCG TCAGATTGAT AATGATCATA ATTTTTCTTT GATGTGCCGT GACCAGTCTG AACTGGCGAC CTATGCCAGA GTCGATAATC AGGCCTATCG TGTGTTGAAA CATAATACCC CGGGTCCATA TACGTTTATT TTTAAGGCGA GTAAGGAAGT GCCTAAGCGC TTGCAAAATC CCAAGAAGAA AACCATTGGG ATCCGGGTTC CGGACAATGT TATAGCACTC GCGCTACTGG AGGCGTTAGA CGCCCCTCTG ATGTCGACCA GTCTAATTTT GCCCGGGGAA GAGTTTACCG AATCAGATCC TGAACATATA CGCGATATTT TAGAGCATCA AGTGGATGTG ATCATTCATG GTGGTTATTT AGGTGAGAAG CCCACCACAG TTATCGATAT GTCCGAGGGG GATATTGAGG TGCTGCGTGA AGGGGCTGGC GATGTGACTC CCTTTATATA A
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Protein sequence | MSQFFYVHEE NPQARLINQA VNAIKNGGVI VYPTDSGYAL GCLLGEKDAM ARIARIRQID NDHNFSLMCR DQSELATYAR VDNQAYRVLK HNTPGPYTFI FKASKEVPKR LQNPKKKTIG IRVPDNVIAL ALLEALDAPL MSTSLILPGE EFTESDPEHI RDILEHQVDV IIHGGYLGEK PTTVIDMSEG DIEVLREGAG DVTPFI
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