| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1682 |
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| Symbol | |
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| ID | 5609925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2015639 |
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| End bp | 2016862 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932552 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001473421 |
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| Protein GI | 157374821 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC TCGACCCCTA CTTCGGCGAA TATGGCGGCA TGTATGTCCC GCAGATCCTT
ATGCCGGCCC TCAAGCAACT CGAGACCGCT TTCGTCGAGG CTCAAGAGGA TGAAGCGTTT
AAAGCTGAGT TTAATGATCT GCTAAAAAAT TATGCAGGCC GCCCAACAGC ACTGACGCTG
ACACGTAACT TAAGCCCGAA TCCTCTGGTA AAGATCTACC TTAAACGCGA AGACTTGCTT
CATGGCGGAG CGCACAAAAC CAACCAGGTT TTAGGTCAGG CTCTGCTTGC GAAACGTATG
GGTAAGAAAG AGATCATTGC CGAAACCGGC GCCGGGCAAC ACGGTGTCGC CACTGCCCTC
GCCTGTGCAC TTTTAGATCT TAAATGTAAA GTCTATATGG GCGCTAAAGA TGTCGAGCGT
CAGTCACCCA ACGTATTTAG AATGAAACTG ATGGGCGCCG AAGTGATCCC TGTCACCTCA
GGGTCTGCTA CGTTAAAAGA TGCCTGTAAT GAAGCGATGC GTGACTGGTC CGGCAGCTAC
GATAAAGCCC ATTACCTGTT AGGCACGGCT GCAGGTCCTC ACCCGTTCCC GACTATCGTA
CGAGAGTTTC AACGCATGAT AGGTGAAGAG ACCAAGAGGC AGATTTTAGA GCGTGAAGGT
AGATTACCCG ACGCGGTGAT CGCCTGTGTT GGTGGCGGCT CGAACGCTAT CGGCATGTTT
GCAGACTTTA TCGAGGAGGA GTCGGTTAAG CTTATCGGTG TCGAACCCGC GGGACTCGGT
ATCGATACTC CTATGCATGG CGCGCCACTT AAACACGGTA AGACCGGGAT ATTTTTCGGT
ATGAAAGCGC CCCTGATGCA AGACAGCGAA GGGCAGATCG AAGAGTCCTA CTCGATATCT
GCCGGCCTGG ATTTTCCTTC GGTTGGCCCA CAGCATGCAC ACCTTGCTGC TACCGGCCGC
GCGACCTACG AGTCGGCGAC CGATGAGGAA GCACTGGAAG CATTCCAGCT ACTGGCACGC
AGCGAAGGGA TCATTCCGGC GCTTGAGTCG GCCCATGCTT TGGCCTATGC CATCAAGCTG
GCAAAAACTG CGACGAAAGA GACCTTACTT GTGGTTAACC TATCGGGCCG TGGCGATAAA
GATATCTTTA CCGTCGCTGA TATTTTAAAG GAACGCGAGC AAGCGCAACA AAAAGCAGAG
GAGAGTGGCG ATGACCGAAT CTAA
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| Protein sequence | MTKLDPYFGE YGGMYVPQIL MPALKQLETA FVEAQEDEAF KAEFNDLLKN YAGRPTALTL
TRNLSPNPLV KIYLKREDLL HGGAHKTNQV LGQALLAKRM GKKEIIAETG AGQHGVATAL
ACALLDLKCK VYMGAKDVER QSPNVFRMKL MGAEVIPVTS GSATLKDACN EAMRDWSGSY
DKAHYLLGTA AGPHPFPTIV REFQRMIGEE TKRQILEREG RLPDAVIACV GGGSNAIGMF
ADFIEEESVK LIGVEPAGLG IDTPMHGAPL KHGKTGIFFG MKAPLMQDSE GQIEESYSIS
AGLDFPSVGP QHAHLAATGR ATYESATDEE ALEAFQLLAR SEGIIPALES AHALAYAIKL
AKTATKETLL VVNLSGRGDK DIFTVADILK EREQAQQKAE ESGDDRI
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