| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1677 |
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| Symbol | |
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| ID | 5611819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2011140 |
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| End bp | 2011970 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932547 |
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| Product | oligopeptide transport system permease protein OppC |
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| Protein accession | YP_001473416 |
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| Protein GI | 157374816 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG TCTTTACTCA GCCAACAGTG CTTGGACTGT CACTGTGCCT GTTTGCCTTA
TTGCTTTTGG CGGTTTTTTG GCCATCATCG GGCTCAGAAC TCTCCTTGCT TGATAAAAAT
TTGCCACCGT CCCTCAATCA CCTGTTTGGT ACCGATTGGC TGGGCCGGGA TCTCTTCAGT
CGTAGTCTCA AGGCTTTGCT GGCCAGCTTC TATACCGGAG GGCTCGCCGT GGCGTTAAGT
TGTTCTATCG CCTTGTTGTT AGCCATGTTT GCTCAGGTCA ACTGCGCCGC TCGTTGGTGT
GTAGATCTGC TGGTGGATGT GTTTATGTCT CTGCCTCATC TCTTGTTGCT TATTCTTCTG
GCGTTAGTCT TCGGCGGGGC TGAGCACGGA TTGATTATGG CCATAGCCTT GAGCCACTGG
CCCAGGCTGA CAAGGCTGCT GCGTTTCGAG ATGCAGGCTG TCGCTAATGC CCCCTATTTT
CAGTTGGCGA AACAGTTCGG TCAATCCCCG CTGACAGCGA TAAGGCGTCA CATGTTGCCT
CATGTTATCC CACAGTGGTT AGTGGGGGGG ATGTTATTGT TTCCCCATGC ACTAACCCAT
ATGGCGGCGC TGACCTTCTT AGGATTTGGT CTGGATCCGG TAAACCCTTC TATGGGAGCA
TTGCTATCCC AAGCCAGTCA ATATCTGTTG ACGGGACATT GGTGGTTAGC CTTATGTCCG
GGAGGATTAC TGTTAATCTG CCTGCTTATC TTGTCTTATA TCGCCAACGC GTTAATTACA
GCGTTGCGCC GAGGTCCTCA AACCCATGTG TCCGGAGGTG AGTTTGCTTA A
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| Protein sequence | MKKVFTQPTV LGLSLCLFAL LLLAVFWPSS GSELSLLDKN LPPSLNHLFG TDWLGRDLFS
RSLKALLASF YTGGLAVALS CSIALLLAMF AQVNCAARWC VDLLVDVFMS LPHLLLLILL
ALVFGGAEHG LIMAIALSHW PRLTRLLRFE MQAVANAPYF QLAKQFGQSP LTAIRRHMLP
HVIPQWLVGG MLLFPHALTH MAALTFLGFG LDPVNPSMGA LLSQASQYLL TGHWWLALCP
GGLLLICLLI LSYIANALIT ALRRGPQTHV SGGEFA
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