| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1656 |
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| Symbol | |
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| ID | 5610188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1982410 |
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| End bp | 1983924 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932526 |
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| Product | amidophosphoribosyltransferase |
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| Protein accession | YP_001473395 |
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| Protein GI | 157374795 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0034] Glutamine phosphoribosylpyrophosphate amidotransferase |
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| TIGRFAM ID | [TIGR01134] amidophosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00921285 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGGTA TCGTCGGAAT AGTTGGCCGA ACATCGGTTA ATCAGACTAT CTATGATGCA
TTAACTGTAC TCCAGCATCG CGGACAAGAT GCTGCTGGTA TCGTGACTGT CGATGGTAGT
GCGTTTAGAT TACGTAAAGC CAATGGTCTG GTAAAAGACG TATTCGAAGC TAAACATATG
CAACGTCTGC AAGGCACTAC GGGGATCGGG CATGTCCGTT ACCCAACTGC CGGTAGCTCT
AGCGCATCAG AAGCTCAGCC TTTTTATGTT AACTCACCCT TTGGTATTAC ATTGGCTCAT
AATGGTAATT TAACAAATAC TCTTGAGTTA CAAGAGCGTT TGGTTAAACA GCGCCGCCAT
ATCAACACCA CATCTGATTC AGAAGTGTTG TTGAATCTGT TAGCCGATGA GTTGCAGCAC
TGCGATAGCC AAGTCTTATC TGAAGATGAA GTGTTTGATG CCATTGCTAA CGTTCACTCA
TTGACTCGTG GTGCCTATGC GGTTGCTGCA CTTATCGTAG GTCAGGGGCT GGTTGCATTT
CGAGACCCGT TTGGCATTCG CCCGCTCGTA TTGGGTAAGC ATAAAACGGA AAGTGGTACC
GAGTATATGG TGGCCTCTGA AAGCGTTGCA CTCGATGCCG TAGGTTTCGA ATTGATGCGT
GATGTGGCAC CGGGTGAAGC TATCTATATC ACTCTCGATG GCCAGTTATT TACCCGCCAA
TGTGCCGAGT CTCCAAGCTA CGCCCCCTGT CTGTTTGAGT TTGTTTATTT TGCTCGCCCG
GATTCGACGA TTGATAAGGT TTCTGTCTAT GGCAGCCGTG TCAACATGGG CTCTATGCTT
GGCGAGAAGA TTAAGAAAGA GTGGGAAGAT CACGATATCG ATGTGGTTAT CCCTATTCCG
GAAACCTCGT GCGATACCGC GTTAGAAATT GCCCGTAATC TGGACCTGCC TTACCGTCAG
GGTTTCGTTA AGAATCGTTA TATTGGCCGT ACTTTTATCA TGCCGGGTCA ACAGGAGCGT
AAGAAGTCTG TTCGTCGTAA ACTCAATGCC ATAGGCGTCG AGTTTAAGGG TAAGAACGTT
CTCCTTGTTG ATGATTCGGT GGTTCGTGGT ACGACATCTG AACAGATCAT CGAAATGGCT
CGTGAAGCGG GTGCTAAGAA GGTTTATTTC GCATCGGCGG CCCCTGAGAT ACGTTTTCCT
AACGTCTACG GTATCGATAT GCCAACGACC GCAGAGCTGA TTGCTCATGG TCGCGATGTG
GATGAGATCA GCAAGATGAT TGGTGCCGAT GGGATGATTT TCCAGGATCT GGAAGATCTG
GTGGAAGCCG TTCGCATGGA AAACCCTGAG ATTAAACGTT TCGAGACCTC TGTCTTCGAC
GGCATTTACA TTACCAACGA TGTCGATCAG GATTATCTCG ATCATATCAC TCAGTTGCGT
AACGACGATG CTAAGGCCAA TCGCAGTAAA GATATCGGCA CTAACATAGA ACTACACAAC
GTCTGCCATC CCTAA
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| Protein sequence | MCGIVGIVGR TSVNQTIYDA LTVLQHRGQD AAGIVTVDGS AFRLRKANGL VKDVFEAKHM
QRLQGTTGIG HVRYPTAGSS SASEAQPFYV NSPFGITLAH NGNLTNTLEL QERLVKQRRH
INTTSDSEVL LNLLADELQH CDSQVLSEDE VFDAIANVHS LTRGAYAVAA LIVGQGLVAF
RDPFGIRPLV LGKHKTESGT EYMVASESVA LDAVGFELMR DVAPGEAIYI TLDGQLFTRQ
CAESPSYAPC LFEFVYFARP DSTIDKVSVY GSRVNMGSML GEKIKKEWED HDIDVVIPIP
ETSCDTALEI ARNLDLPYRQ GFVKNRYIGR TFIMPGQQER KKSVRRKLNA IGVEFKGKNV
LLVDDSVVRG TTSEQIIEMA REAGAKKVYF ASAAPEIRFP NVYGIDMPTT AELIAHGRDV
DEISKMIGAD GMIFQDLEDL VEAVRMENPE IKRFETSVFD GIYITNDVDQ DYLDHITQLR
NDDAKANRSK DIGTNIELHN VCHP
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